1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCAGGTCCTGGTCGATCTTACAGATGGCGGCGTGGATTACAGCTTTGAGTGCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAGgtaaagcgttcccattgcggcatctgggtgttgctgcttatatctcagctgtatcctgtttatccagccattcccattcgcttgttttaaatttgggggcgcgcacacctgtag
species | Zea mays |
transcript | GRMZM5G824600_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAG GGCTGGGGAACCTCCGTCATCGTCGGCGTCGEST: gi|60343794|gb|DN210767.1|DN210767
genomic: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAGgtaaagcgtt ... acacctgtagGGCTGGGGAACCTCCGTCATCGTCGGCGTCG
EST: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAG GGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATCEST: gi|74034792|gb|DT535283.1|DT535283
genomic: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAGgtaaagcgtt ... acacctgtagGGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATC
EST: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAG GGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATCEST: gi|78077865|gb|DV506290.1|DV506290
genomic: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAGgtaaagcgtt ... acacctgtagGGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATC
EST: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAG GGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATCEST: gi|211384473|gb|FL377381.1|FL377381
genomic: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAGgtaaagcgtt ... acacctgtagGGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATC
EST: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAG GGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATCEST: gi|61119600|gb|DN560561.1|DN560561
genomic: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAGgtaaagcgtt ... acacctgtagGGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATC
EST: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAG GGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATCEST: gi|60349074|gb|DN216047.1|DN216047
genomic: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAGgtaaagcgtt ... acacctgtagGGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATC
EST: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAG GGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATCEST: gi|78120687|gb|DV539071.1|DV539071
genomic: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAGgtaaagcgtt ... acacctgtagGGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATC
EST: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAG GGCTGGGGAACCTCCGTCATTGTCGGCGTCGCCGCCTCTGGCCAGGAGATCEST: gi|211142580|gb|FL467371.1|FL467371
genomic: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAGgtaaagcgtt ... acacctgtagGGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATC
EST: TTTCGGTTATGAGGGGCTGCACTGGAATGCTGCCACAAG GGCTGGGGAACCTCCGTCATCGNT-YGCGTCGCCGCYTCTGGCCAGGAGATEST: gi|78077864|gb|DV506289.1|DV506289
genomic: TTTCGGTTATGA-GGGCTGCACTGGAATGCTGCCACAAGgtaaagcgtt ... acacctgtagGGCTGGGGAACCTCCGTCATCG-TCGGCGTCGCCGCCTCTGGCCAGGAGAT
EST: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAG GGCTGGGGAACCTCCGTCATTGTTGGGGTCGCCGCCTCTGGCCAGGAGATCEST: gi|71429707|gb|DR810757.1|DR810757
genomic: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAGgtaaagcgtt ... acacctgtagGGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATC
EST: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAG GGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATCEST: gi|78092172|gb|DV520546.1|DV520546
genomic: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAGgtaaagcgtt ... acacctgtagGGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATC
EST: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAG GGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATCEST: gi|110940376|gb|EE160533.1|EE160533
genomic: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAGgtaaagcgtt ... acacctgtagGGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATC
EST: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAG GGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATCEST: gi|60337655|gb|DN204628.1|DN204628
genomic: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAGgtaaagcgtt ... acacctgtagGGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATC
EST: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAG GGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATCEST: gi|31355047|gb|CD439404.1|CD439404
genomic: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAGgtaaagcgtt ... acacctgtagGGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATC
EST: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAG GGCTGGGGAACTTCCGTCATCGTTGGTGTCGCCGCCTCTGGCCAGGAGATCEST: gi|30087007|gb|CB885215.1|CB885215
genomic: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAGgtaaagcgtt ... acacctgtagGGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATC
EST: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAG GGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATCEST: gi|60348372|gb|DN215345.1|DN215345
genomic: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAGgtaaagcgtt ... acacctgtagGGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATC
EST: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAG GGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATCEST: gi|211284800|gb|FL428470.1|FL428470
genomic: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAGgtaaagcgtt ... acacctgtagGGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATC
EST: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAG GGCTTGGGAACCTCCGTCATCGTCGGCGTCGC-GCCTCTGGCCAGGAGATCEST: gi|60344516|gb|DN211489.1|DN211489
genomic: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAGgtaaagcgtt ... acacctgtagGGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATC
EST: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAG GGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATCEST: gi|110515671|gb|EE020259.1|EE020259
genomic: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAGgtaaagcgtt ... acacctgtagGGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATC
EST: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAG GGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATCEST: gi|110518190|gb|EE022777.1|EE022777
genomic: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAGgtaaagcgtt ... acacctgtagGGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATC
EST: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAG GGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATC
genomic: GCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAGgtaaagcgtt ... acacctgtagGGCTGGGGAACCTCCGTCATCGTCGGCGTCGCCGCCTCTGGCCAGGAGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGGTCCTGGTCGATCTTACAGATGGCGGCGTGGATTACAGCTTTGAGTGCATTGGAAATGTTTCGGTTATGAGGGCTGCACTGGAATGCTGCCACAAGgtaaagcgttcccattgcggcatctgggtgttgctgcttatatctcagctgtatcctgtttatccagccattcccattcgcttgttttaaatttgggggcgcgcacacctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC