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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggggtagcagtttccttgtattgttcgttgttcgtacgacgttcgatttgatctggcgtgagggggttcatggctggtctgtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGGTGGCGCCGCCGCAGGCCGGCGAGGTCCGCGTCAAGATCCTATTCACCGC

Basic information

species Zea mays
transcript GRMZM5G824600_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211403715|gb|FL311339.1|FL311339
EST:     CCTGCAAAGGTAACCTGCTTGATCTTGTGTGCTCCTGCTTCTTCGCATCG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCTGCAAAGGTAACCTGCTTGATCTTGTGTGCTCCTGCTTCTTCGCATCGgtaggggtag ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgacgttcgatttgatctggcgtgagggggttcatggctggtctgtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGGTGGCGCCGCCGCAGGCCGGCGAGGTCCGCGTCAAGATCCTATTCACCGC
          atttgat  putative branch site (score: 5)
          atttgat  TA-rich tract