1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagattttcttcttttttttgcgcaaagctacttgtttgttgtactaaataaactgagcagtcaaaaatcatgttgcatctcaattgatggtgtgttgtttcacttcactcttcccttttcagTCATATACTCGGATGCTTATTAAGAACGAACAAGGCTATGCTCCACTTGAATGCCTTGATCGGCATCTCAAGAACATGCAGATAATAAATTATGAGGACA
species | Zea mays |
transcript | GRMZM5G821968_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCATTGGCTTCTTAAAATGCTTTCCATGCGTGGAGAAGCTATACATTGTG TCATATACTCGGATGCTTATTAAGAACGAACAAGGCTATGCTCCACTTGAAEST: gi|149088975|gb|EE178120.2|EE178120
genomic: TCATTGGCTTCTTAAAATGCTTTCCATGCGTGGAGAAGCTATACATTGTGgtgagatttt ... cccttttcagTCATATACTCGGATGCTTATTAAGAACGAACAAGGCTATGCTCCACTTGAA
EST: ATTGGCTTCTTAAAATGCTTTCCATGCGTGGAGAAGCTATACATTGTG TCATATACTCGGATGCTTATTAAGAACGAACAAGGCTATGCTCCACTTGAAEST: gi|149111062|gb|EE294559.2|EE294559
genomic: ATTGGCTTCTTAAAATGCTTTCCATGCGTGGAGAAGCTATACATTGTGgtgagatttt ... cccttttcagTCATATACTCGGATGCTTATTAAGAACGAACAAGGCTATGCTCCACTTGAA
EST: TCATTGGCTTCTTAAAATGCTTTCCATGCGTGGAGAAGCTATACATTGTG TCATATACTCGGATGCTTATTAAGAACGAACAAGGCTATGCTCCACTTGAA
genomic: TCATTGGCTTCTTAAAATGCTTTCCATGCGTGGAGAAGCTATACATTGTGgtgagatttt ... cccttttcagTCATATACTCGGATGCTTATTAAGAACGAACAAGGCTATGCTCCACTTGAA
tcatgttgcatctcaattgatggtgtgttgtttcacttcactcttcccttttcagTCATATACTCGGATGCTTATTAAGAACGAACAAGGCTATGCTCCACTTGAATGCCTTGATCGGCATCTCAAGAACATGCAGATAATAAATTATGAGGACA
aattgat putative branch site (score: 1)
tgttgtttcacttcac putative PPT
aattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagattttcttcttttttttgcgcaaagctacttgtttgttgtactaaataaactgagcagtcaaaaatcatgttgcatctcaattgatggtgtgttgtttcacttcactcttcccttttcagTCATATACTCGGATGCTTATTAAGAACGAACAAGGCTATGCTCCACTTGAATGCCTTGATCGGCATCTCAAGAACATGCAGATAATAAATTATGAGGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT