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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACAATGCAGTGTGTGATGCAATAAAGgtaagagaagcatcactattattatctatttgtttagtttatatgaagaatttgatgttcttgatttctttccaccataccgataaagttgttgtttattaattaccaagacattaatttttttatgctaaaatatgaagaaacaattaaaatgttcttttaatatctcag

Basic information

species Zea mays
transcript GRMZM5G818450_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G818450_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os12g26290.6 (Oryza sativa), 5'ss of exon 6
------------------------------------------------------------------------ACACAATGCAGTGTGTGATGCAATAAAGgtaagagaa-gcatcactattattatctatttgtttagtttatatgaagaat-----ttgatgttcttgattt-ctttccacca--taccgat---------------aaagttgttgtttattaattaccaagacattaattt-----ttttatgcta-aaatatgaagaaacaatta-aaatgttcttttaatatctcag
                                                                        |||||||||||| |||||||||||||||||||| |||   ||||  | |||| |||||||||||||||| || |||||||     ||| ||||||||| |  ||| ||||    |  | ||               ||   | |    | ||| ||||||| ||||||||||      ||||||||| |||||||||||||  |||| ||||||| |||| | |||||||
TGTGGCATTATCCGGCGACATTCGCAACAGTTGGGCTGGTGTTTCGATCTTACAAGCTCTTTTTGTTAAGGAACACAATGCAGTTTGTGATGCAATAAAGgtaagcgaatatatcatcactattttctatttgtttagttt-taggaagaatataatttgctgttcttgactagcttgccactgattgtctatttgtttagttttaggaagaatataaactgttatttaccaaaacattaatttgttttctttatgctataaatatgaagaaaagattacaaatgtttttttta-atctcag