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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagaagcatcactattattatctatttgtttagtttatatgaagaatttgatgttcttgatttctttccaccataccgataaagttgttgtttattaattaccaagacattaatttttttatgctaaaatatgaagaaacaattaaaatgttcttttaatatctcagGAAGAACATCCCAACCTATCAGACAAAGAATTATATCGGTATGCTAGATTGGTCACTTCTGTTGTCATTGCGAAGGTTCACACTCTTGATTGGACTGTCG

Basic information

species Zea mays
transcript GRMZM5G818450_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G818450_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os12g26290.6 (Oryza sativa), 3'ss of exon 6
gtaagagaa-gcatcactattattatctatttgtttagtttatatgaagaat-----ttgatgttcttgattt-ctttccacca--taccgat---------------aaagttgttgtttattaattaccaagacattaa-----tttttttatgcta-aaatatgaagaaacaatta-aaatgttcttttaatatctcagGAAGAACATCCCAACCTATCAGACAAAGAATTATATCGGTATGCTAGATTGGTCACTTCTGTTGTCATTGCGAAGGTTCACACTCTTGATTGGACTGTCG
||||| |||   ||||  | |||| |||||||||||||||| || |||||||     ||| ||||||||| |  ||| ||||    |  | ||               ||   | |    | ||| ||||||| |||||||     ||| ||||||||| |||||||||||||  |||| ||||||| |||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||| ||| ||||| |||||||||||| |||||||||||||||
gtaagcgaatatatcatcactattttctatttgtttagttt-taggaagaatataatttgctgttcttgactagcttgccactgattgtctatttgtttagttttaggaagaatataaactgttatttaccaaaacattaatttgttttctttatgctataaatatgaagaaaagattacaaatgtttttttta-atctcagGAAGAACATCCCAACCTATCAGACGAAGAATTATATCGGTATGCCAAATTGGTCACTTCTGCTGTTATTGCAAAGGTTCACACTATTGATTGGACTGTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttttatgctaaaatatgaagaaacaattaaaatgttcttttaatatctcagGAAGAACATCCCAACCTATCAGACAAAGAATTATATCGGTATGCTAGATTGGTCACTTCTGTTGTCATTGCGAAGGTTCACACTCTTGATTGGACTGTCG
                                      ttctttta  CT-rich tract
            taaaatatgaagaaac  TA-rich tract