1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgccctgcattctgtccattgcagcttggttgcatataagtctgtgactttgccaactccctttaccttatattttattgagacaattatgtcattgcagGTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCTGCTGGACCATCTTTAGTTGAACAGACAAGTCACTTGACAGCATTCCGTG
species | Zea mays |
transcript | GRMZM5G809546_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CGATACCACTTGTTAGACCAGGAAAAAGTACAGCTGCTTATATTAAAACA GTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCTEST: gi|60353250|gb|DN220223.1|DN220223
genomic: CGATACCACTTGTTAGACCAGGAAAAAGTACAGCTGCTTATATTAAAACAgtgagttctt ... gtcattgcagGTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCT
EST: CGATACCACTTGTTAGACCAGGAAAAAGTACAGCTGCTTATATTAAAACA GTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCTEST: gi|94473420|gb|EB702378.1|EB702378
genomic: CGATACCACTTGTTAGACCAGGAAAAAGTACAGCTGCTTATATTAAAACAgtgagttctt ... gtcattgcagGTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCT
EST: CGATACCACTTGTTAGACCAGGAAAAAGTACAGCTGCTTATATTAAAACA GTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCTEST: gi|149099085|gb|EE185105.2|EE185105
genomic: CGATACCACTTGTTAGACCAGGAAAAAGTACAGCTGCTTATATTAAAACAgtgagttctt ... gtcattgcagGTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCT
EST: CGATACCACTTGTTAGACCAGGAAAAAGTACAGCTGCTTATATTAAAACA GTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCTEST: gi|148963940|gb|EE015061.2|EE015061
genomic: CGATACCACTTGTTAGACCAGGAAAAAGTACAGCTGCTTATATTAAAACAgtgagttctt ... gtcattgcagGTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCT
EST: CGATACCACTTGTTAGACCAGGAAAAAGTACAGCTGCTTATATTAAAACA GTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCTEST: gi|148951011|gb|EC896663.2|EC896663
genomic: CGATACCACTTGTTAGACCAGGAAAAAGTACAGCTGCTTATATTAAAACAgtgagttctt ... gtcattgcagGTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCT
EST: CGATACCACTTGTTAGACCAGGAAAAAGTACAGCTGCTTATATTAAAACA GTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCTEST: gi|149098781|gb|EE184792.2|EE184792
genomic: CGATACCACTTGTTAGACCAGGAAAAAGTACAGCTGCTTATATTAAAACAgtgagttctt ... gtcattgcagGTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCT
EST: CGATACCACTTGTTAGACCAGGAAAAAGTACAGCTGCTTATATTAAAACA GTTTTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCTEST: gi|86475140|gb|DY241510.1|DY241510
genomic: CGATACCACTTGTTAGACCAGGAAAAAGTACAGCTGCTTATATTAAAACAgtgagttctt ... gtcattgcagGTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCT
EST: CGATACCACTTGTTAGACCAGGAAAAAGTACAGCTGCTTATATTAAAACA GTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCTEST: gi|148936039|gb|EC880097.2|EC880097
genomic: CGATACCACTTGTTAGACCAGGAAAAAGTACAGCTGCTTATATTAAAACAgtgagttctt ... gtcattgcagGTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCT
EST: CGATACCACTTGTTAGACCAGGAAAAAGTACAGCTGCTTATATTAAAACA GTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCTEST: gi|78022434|gb|DV490821.1|DV490821
genomic: CGATACCACTTGTTAGACCAGGAAAAAGTACAGCTGCTTATATTAAAACAgtgagttctt ... gtcattgcagGTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCT
EST: CGATACCACTTGTTAGACCAGGAAAAAGTACAGCTGCTTATATTAAAACA GTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCTEST: gi|5901117|gb|AW042217.1|AW042217
genomic: CGATACCACTTGTTAGACCAGGAAAAAGTACAGCTGCTTATATTAAAACAgtgagttctt ... gtcattgcagGTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCT
EST: CGATACCACTTGTTAGACCAGGAAAAAGTACAGCTGCTTATATTAAAACA GTTCTTAGTCGCATATCTG-CTTGG-ATCTEST: gi|78106672|gb|DV525090.1|DV525090
genomic: CGATACCACTTGTTAGACCAGGAAAAAGTACAGCTGCTTATATTAAAACAgtgagttctt ... gtcattgcagGTTCTTAGTCGCATATCTGTCTTGGGATCT
EST: AAAAAGTACAGCTGCTTATATTAAAACA GTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCTEST: gi|22542657|gb|BU093095.1|BU093095
genomic: AAAAAGTACAGCTGCTTATATTAAAACAgtgagttctt ... gtcattgcagGTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCT
EST: CGATACCACTTGTTAGACCAGGAAAAAGTACAGCTGCTTATATTAAAACA GTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCTEST: gi|149101790|gb|EE187903.2|EE187903
genomic: CGATACCACTTGTTAGACCAGGAAAAAGTACAGCTGCTTATATTAAAACAgtgagttctt ... gtcattgcagGTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCT
EST: CGATACCACTTGTTAGACCAGGAAAAAGTACAGCTGCTTATATTAAAACA GTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCTEST: gi|71426546|gb|DR807596.1|DR807596
genomic: CGATACCACTTGTTAGACCAGGAAAAAGTACAGCTGCTTATATTAAAACAgtgagttctt ... gtcattgcagGTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCT
EST: CGATACCACTTGTTAGACCAGGAAAAAGTACAGCTGCTTATATTAAAACA GTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCT
genomic: CGATACCACTTGTTAGACCAGGAAAAAGTACAGCTGCTTATATTAAAACAgtgagttctt ... gtcattgcagGTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCT
gactttgccaactccctttaccttatattttattgagacaattatgtcattgcagGTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCTGCTGGACCATCTTTAGTTGAACAGACAAGTCACTTGACAGCATTCCGTG
ttatattttattgaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgccctgcattctgtccattgcagcttggttgcatataagtctgtgactttgccaactccctttaccttatattttattgagacaattatgtcattgcagGTTCTTAGTCGCATATCTGTCTTGGGATCTGCATTTCTGGCTGTGCTAGCTGCTGGACCATCTTTAGTTGAACAGACAAGTCACTTGACAGCATTCCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - -tgcattc
- - - - - - - - - ttgcagc
- - - - - - - - - - - - - tggttgc