Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataacaacagacagctccagaccttcatcaaatcatcagtagataagatacttcgtataggcatgtgcctgtcccatcatacaaacatacgtgccaacgccacctcttcaattccctgcttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATGCTGGGCACGGTAAGCCCGGGGGTACGACGGTTGACGTAGGCAAGGGCGG

Basic information

species Zea mays
transcript GRMZM5G800586_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G800586_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g53240.1 (Oryza sativa), 3'ss of exon 2
gtataacaacagacagctccagaccttcatcaaatcatcagtaga--taagatacttcgtataggcatgtgcctgtcccatcatacaaacatacgtgccaacgccacctcttcaattccctgcttgttcgca--gCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATGCTGGGCACGGTAAGCCCGGGGGTACGACGGTTGACGTAGGCAAGGGCGG---
                                  ||  |||  |   |   || | || |  |  | | ||  |  |  || |     |   || |   ||||    ||||||   ||| || |||    |    | ||||| |||||| | || ||||||||| ||||||| || || ||||| || |||||||| |||||||| || || || ||||| ||||||||||| ||   
---------------------------------gtccacagagggatttgaatccatcctccacac-tctggata-cagattactttgatcaacttattaacgaactctcttc---tccttgattgcctactatacagGCGGAGGCACGTCGGTGAACGTCGGCGGGGGCGGCGTCCATGTCGACGCGGGGCACGGCAAGCCCGGCGGCACAACCGTTGATGTAGGCAAGGGTGGCGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148931490|gb|EC874508.2|EC874508
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|148933186|gb|EC876831.2|EC876831
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|91873690|gb|EB403647.1|EB403647
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|149097603|gb|EE183496.2|EE183496
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|149080423|gb|EE169445.2|EE169445
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|148963848|gb|EE014950.2|EE014950
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|76280837|gb|DV020405.1|DV020405
EST:     CAACACTCCCATGCCAACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|149100538|gb|EE186622.2|EE186622
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|211205174|gb|FL195504.1|FL195504
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|211205171|gb|FL195501.1|FL195501
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|211205168|gb|FL195498.1|FL195498
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|211200041|gb|FL195480.1|FL195480
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|148971937|gb|EE022722.2|EE022722
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|74238929|gb|DT646843.1|DT646843
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|149089243|gb|EE178447.2|EE178447
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|91873561|gb|EB403518.1|EB403518
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|149112542|gb|EE295402.2|EE295402
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|149088531|gb|EE177641.2|EE177641
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|93284188|gb|EB676452.1|EB676452
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTTCAACGTCAGCTGGGGCGGTGTTCACGTCCAT
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGT-CAACGTCGGCTGGGGCGGTGTTCACGTCGAT
EST: gi|148933868|gb|EC877835.2|EC877835
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|148970748|gb|EE021485.2|EE021485
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|211205169|gb|FL195499.1|FL195499
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|71446790|gb|DR827840.1|DR827840
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|211205173|gb|FL195503.1|FL195503
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGG-G-CACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|211200038|gb|FL195477.1|FL195477
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|76013437|gb|DT940607.1|DT940607
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|91048911|gb|EB159329.1|EB159329
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|211202594|gb|FL195485.1|FL195485
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|93016154|gb|EB641674.1|EB641674
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|148985345|gb|EE029653.2|EE029653
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|94480130|gb|EB709088.1|EB709088
EST:     AACACTCCCATGCCGACCTCCCTCTCCCAACTCCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: AACACTCCCATGCCGACCTCCCTCTCCCAACT-CCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|211202599|gb|FL195490.1|FL195490
EST:     CGACACTCCCATGCCGACCTCCCTCTCCCAACTCCTAGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTCCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|78120632|gb|DV539016.1|DV539016
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|211202597|gb|FL195488.1|FL195488
EST:     CGACACTCCCATGCCGACCTCCCTCTCCCAACTCCTAGACGCCGCTCCAG                         CCGGCGG-GNCACGACCGTCAACGTCGGCTGGGGCGGTGTCCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|71449582|gb|DR830632.1|DR830632
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|149098603|gb|EE184604.2|EE184604
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|211202604|gb|FL195495.1|FL195495
EST:     CGACACTCCCATGCCGACCTCCCTCTCCCAACTCCTAGACGCCGCTCCAG                         CCGGCGGCGACACGACCGTCAACGTCGGCTGGGGCGGTGTCCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|37421478|gb|CF648439.1|CF648439
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|149014945|gb|EE044676.2|EE044676
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|148985727|gb|EE029741.2|EE029741
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|149014260|gb|EE043828.2|EE043828
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|91873692|gb|EB403649.1|EB403649
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|149088231|gb|EE177338.2|EE177338
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|211202598|gb|FL195489.1|FL195489
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|211205166|gb|FL195496.1|FL195496
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|89251451|gb|DY623237.1|DY623237
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|148996362|gb|EE035649.2|EE035649
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|148930318|gb|EE284717.2|EE284717
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|76285493|gb|DV025061.1|DV025061
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
EST: gi|211202591|gb|FL195482.1|FL195482
EST:     CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAG                         CCGGCGGSGNCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG
genomic: CAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 3 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 13

GGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAGTCTGCTCTTCCCAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATGCTGGGCACGGTAAGCCCGGGGGTACGACGGTTGACGTAGGCAAGGGCGG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 204

GGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAGTCTGCTCTTCCCAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATGCTGGGCACGGTAAGCCCGGGGGTACGACGGTTGACGTAGGCAAGGGCGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1167

GGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAGTCTGCTCTTCCCAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCGACGCCGCTCCAGgtataacaac ... ttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATGCTGGGCACGGTAAGCCCGGGGGTACGACGGTTGACGTAGGCAAGGGCGG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcatacaaacatacgtgccaacgccacctcttcaattccctgcttgttcgcagCCGGCGGCGGCACGACCGTCAACGTCGGCTGGGGCGGTGTTCACGTCGATGCTGGGCACGGTAAGCCCGGGGGTACGACGGTTGACGTAGGCAAGGGCGG
                                     ttccctgcttgttc  CT-rich tract
        aaacata  TA-rich tract