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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atggaagcagtttcagagatgttaacattctttacaccttagtattgacataaggtagacgacctctgatgcaaggataactcttgtggtttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAGTCTGCTCTTCCCAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCG

Basic information

species Zea mays
transcript GRMZM5G800586_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G800586_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g53240.1 (Oryza sativa), 3'ss of exon 1
--------atggaagcagtttcagagatgttaacattctttacaccttagtattgacataaggtagacgacctctgatgcaaggataactcttgtggtttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAGTCTGCTCTTCCCAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCG
        || ||  |||    |    | | |  ||| || |  |   |||| |||  | |   |      |  |||  |     ||||   |    ||||||| ||| | || || |||||||||||||| |||||  ||||||| || |||||||| || |||||||||||| ||||||| |||| ||| ||||| || || ||| 
cacgtttgatagactcagcaaaatcagtat-agtattattcaagctggagtactgatctgaaaca------cgttgaaactgtagtaacctgta-aatttgcatacagATCGCTTCAGTAGGAAGCCATGCCGCTCGGACTCCGGAGCAATACTGGAAATCAGCTCTTCCCAACTCTCCCATCCCGAGCTCGCTCTCTCAGCTTCTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148931490|gb|EC874508.2|EC874508
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|148933186|gb|EC876831.2|EC876831
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|91873690|gb|EB403647.1|EB403647
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|149097603|gb|EE183496.2|EE183496
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|149080423|gb|EE169445.2|EE169445
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|148963848|gb|EE014950.2|EE014950
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|76280837|gb|DV020405.1|DV020405
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|149100538|gb|EE186622.2|EE186622
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|211205174|gb|FL195504.1|FL195504
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|211205171|gb|FL195501.1|FL195501
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|211205168|gb|FL195498.1|FL195498
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|211200041|gb|FL195480.1|FL195480
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|148971937|gb|EE022722.2|EE022722
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|74238929|gb|DT646843.1|DT646843
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|149089243|gb|EE178447.2|EE178447
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|91873561|gb|EB403518.1|EB403518
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|149112542|gb|EE295402.2|EE295402
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|149088531|gb|EE177641.2|EE177641
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|93284188|gb|EB676452.1|EB676452
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|148933868|gb|EC877835.2|EC877835
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|148970748|gb|EE021485.2|EE021485
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|211205169|gb|FL195499.1|FL195499
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|71446790|gb|DR827840.1|DR827840
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|211205173|gb|FL195503.1|FL195503
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGNCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|211200038|gb|FL195477.1|FL195477
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|76013437|gb|DT940607.1|DT940607
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|91048911|gb|EB159329.1|EB159329
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|211202594|gb|FL195485.1|FL195485
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|93016154|gb|EB641674.1|EB641674
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|148985345|gb|EE029653.2|EE029653
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|94480130|gb|EB709088.1|EB709088
EST:     TCCATGGAGAGGCTCCATTGCCCGGCCTACTTGGCTTCCTATTG                         CTTCGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAA
genomic: TCCATGGAGAGGCT-CATTG-CCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTT-GCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAA
EST: gi|211202599|gb|FL195490.1|FL195490
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|78120632|gb|DV539016.1|DV539016
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|211202597|gb|FL195488.1|FL195488
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCG-CCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|71449582|gb|DR830632.1|DR830632
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|149098603|gb|EE184604.2|EE184604
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|211202604|gb|FL195495.1|FL195495
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|37421478|gb|CF648439.1|CF648439
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|149014945|gb|EE044676.2|EE044676
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|148985727|gb|EE029741.2|EE029741
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|149014260|gb|EE043828.2|EE043828
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|91873692|gb|EB403649.1|EB403649
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|149088231|gb|EE177338.2|EE177338
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|211202598|gb|FL195489.1|FL195489
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCTGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|211205166|gb|FL195496.1|FL195496
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|89251451|gb|DY623237.1|DY623237
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|148996362|gb|EE035649.2|EE035649
EST:     CTTTGGCTTCCCTGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|148930318|gb|EE284717.2|EE284717
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|76285493|gb|DV025061.1|DV025061
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
EST: gi|211202591|gb|FL195482.1|FL195482
EST:     CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTG                         GTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG
genomic: CTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 3 RNA-Seq libraries.


Block sizes: 39 (upstream exon), 43 (downstream exon)
Score: 3

CGCTCTCTCCTTTCACTGGGAACATCTATCAGCTCGCGCTCATTGGCCATCTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAGTCTGCTCTTCCCAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 36

CGCTCTCTCCTTTCACTGGGAACATCTATCAGCTCGCGCTCATTGGCCATCTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAGTCTGCTCTTCCCAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 501

CGCTCTCTCCTTTCACTGGGAACATCTATCAGCTCGCGCTCATTGGCCATCTTTGGCTTCCATGGAGAGGCTCATTGCCGGCCTACTTGGCTTCCTATTGgtcagtcagt ... ttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAGTCTGCTCTTCCCAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atggaagcagtttcagagatgttaacattctttacaccttagtattgacataaggtagacgacctctgatgcaaggataactcttgtggtttgcatgcagGTTGCATCGGTAGGAAGCCATGCAGCTCGTGCTCCGGATCAGTACTGGAAGTCTGCTCTTCCCAACACTCCCATGCCGACCTCCCTCTCCCAACTCCTCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- -gaagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatgc