ERISdb: a Database of Plant Splice Sites

General
EST
RNA-Seq
PPT, BS, UA-tract

Sequence

atgc intronic sequence ATGC exonic sequence

gtaagcctgcctctgtaaaccgtttatttgatctcttacacctccctctctctgtttcaaatgcttatacctacatttcatcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGCCATCTGGGCCATGTGTTCAAGGGTGAAGGCTTCAAGACACCTACTGATG

Basic information

species	Zea mays
transcript	GRMZM2G577677_T01
intron #	2
splice site	3'
intron type	U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|211103003|gb|FK965755.1|FK965755

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211200006|gb|FK965789.1|FK965789

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211202568|gb|FK965803.1|FK965803

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAG
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAG

EST: gi|211103004|gb|FK965756.1|FK965756

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211200005|gb|FK965788.1|FK965788

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211202562|gb|FK965797.1|FK965797

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTTGG
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGT-GG

EST: gi|211202564|gb|FK965799.1|FK965799

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211200002|gb|FK965785.1|FK965785

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211202567|gb|FK965802.1|FK965802

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         --A--TCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211205142|gb|FK965817.1|FK965817

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGA
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGA

EST: gi|211200004|gb|FK965787.1|FK965787

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211200000|gb|FK965783.1|FK965783

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211200010|gb|FK965793.1|FK965793

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211205144|gb|FK965819.1|FK965819

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211103008|gb|FK965760.1|FK965760

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211205141|gb|FK965816.1|FK965816

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211199999|gb|FK965782.1|FK965782

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211103006|gb|FK965758.1|FK965758

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211202561|gb|FK965796.1|FK965796

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|84980827|gb|DW531176.1|DW531176

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211200011|gb|FK965794.1|FK965794

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211105485|gb|FK965775.1|FK965775

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211205146|gb|FK965821.1|FK965821

EST:     GCGGCTKSCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211105478|gb|FK965768.1|FK965768

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211205136|gb|FK965811.1|FK965811

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211200001|gb|FK965784.1|FK965784

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211103011|gb|FK965763.1|FK965763

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211200012|gb|FK965795.1|FK965795

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211105489|gb|FK965779.1|FK965779

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211105486|gb|FK965776.1|FK965776

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTTAGAGATCACATGTGCAGCCTGCGGTGG
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGT-AGAGATCACATGTGCAGCCTGCGGTGG

EST: gi|211202574|gb|FK965809.1|FK965809

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGA
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGA

EST: gi|211105488|gb|FK965778.1|FK965778

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211105484|gb|FK965774.1|FK965774

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211205147|gb|FK965822.1|FK965822

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211205140|gb|FK965815.1|FK965815

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211200009|gb|FK965792.1|FK965792

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211105483|gb|FK965773.1|FK965773

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211105479|gb|FK965769.1|FK965769

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCG-TGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211202572|gb|FK965807.1|FK965807

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211103007|gb|FK965759.1|FK965759

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCG-TGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211103005|gb|FK965757.1|FK965757

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211202570|gb|FK965805.1|FK965805

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211105480|gb|FK965770.1|FK965770

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGGTGG
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGG-TGG

EST: gi|211202571|gb|FK965806.1|FK965806

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211200007|gb|FK965790.1|FK965790

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|33101372|gb|CF061332.1|CF061332

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211205145|gb|FK965820.1|FK965820

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211105487|gb|FK965777.1|FK965777

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211105490|gb|FK965780.1|FK965780

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211200008|gb|FK965791.1|FK965791

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211105476|gb|FK965766.1|FK965766

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211202563|gb|FK965798.1|FK965798

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211202575|gb|FK965810.1|FK965810

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTG
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTG

EST: gi|211105481|gb|FK965771.1|FK965771

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211200003|gb|FK965786.1|FK965786

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211103013|gb|FK965765.1|FK965765

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGARCA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211202573|gb|FK965808.1|FK965808

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

EST: gi|211202566|gb|FK965801.1|FK965801

EST:     GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACA                         CCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC
genomic: GCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGC

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 302

TGGCTGCGGGACTCCCCTGTACAAGTCCGCCACAAAATTTGATTCTGGCTGCGGCTGGCCTGCATTCTTTGAGGGGCTTCCAGGAGCCATAAACCGAACAgtaagcctgc ... atcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGCCATCTGGGCCATGTGTTCAAGGGTGAAGGCTTCAAGACACCTACTGATG

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 889

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 995

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 387

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

cttacacctccctctctctgtttcaaatgcttatacctacatttcatcgttgcagCCAGATCCTGATGGTAGGAGGGTAGAGATCACATGTGCAGCCTGCGGTGGCCATCTGGGCCATGTGTTCAAGGGTGAAGGCTTCAAGACACCTACTGATG

 ctcttac  putative branch site (score: 387)
                                         tttcatc  putative PPT
                    tttcaaat  TA-rich tract

Data associated with selected splice site

Sequence

Basic information

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

RNA-Seq data