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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATGGCGTCGGGGAACAACAACAAGCAGAGGAGCGAGGAGGAGTGGCGCGTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactctaccttctctcctctcttccccccctaagcgactgccactgtgagtctgacgattcatatttggctgaggttgctgttgttcctctgatc...

Basic information

species Zea mays
transcript GRMZM2G577677_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211103003|gb|FK965755.1|FK965755
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211200006|gb|FK965789.1|FK965789
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211202568|gb|FK965803.1|FK965803
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211103004|gb|FK965756.1|FK965756
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211200005|gb|FK965788.1|FK965788
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211202562|gb|FK965797.1|FK965797
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAWATTCTACGGCGACGGGGTTTATWA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211202564|gb|FK965799.1|FK965799
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|166652851|gb|EG162618.1|EG162618
EST:     CCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: CCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211200002|gb|FK965785.1|FK965785
EST:     GTCGTACTCTMCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211202567|gb|FK965802.1|FK965802
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         N
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccag-
EST: gi|211202567|gb|FK965802.1|FK965802
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         N
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccag-
EST: gi|211205142|gb|FK965817.1|FK965817
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211200004|gb|FK965787.1|FK965787
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211200000|gb|FK965783.1|FK965783
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211200010|gb|FK965793.1|FK965793
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211205144|gb|FK965819.1|FK965819
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211103008|gb|FK965760.1|FK965760
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211205141|gb|FK965816.1|FK965816
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211199999|gb|FK965782.1|FK965782
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211103006|gb|FK965758.1|FK965758
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCYACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211202561|gb|FK965796.1|FK965796
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|84980827|gb|DW531176.1|DW531176
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211200011|gb|FK965794.1|FK965794
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211105485|gb|FK965775.1|FK965775
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211205146|gb|FK965821.1|FK965821
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211105478|gb|FK965768.1|FK965768
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         N
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccag-
EST: gi|211105478|gb|FK965768.1|FK965768
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         N
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccag-
EST: gi|211205136|gb|FK965811.1|FK965811
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211200001|gb|FK965784.1|FK965784
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211103011|gb|FK965763.1|FK965763
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211200012|gb|FK965795.1|FK965795
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211105489|gb|FK965779.1|FK965779
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211105486|gb|FK965776.1|FK965776
EST:     GTCGTACTCTCCCCTGACCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211202574|gb|FK965809.1|FK965809
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211105488|gb|FK965778.1|FK965778
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211105484|gb|FK965774.1|FK965774
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211205147|gb|FK965822.1|FK965822
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211205140|gb|FK965815.1|FK965815
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211200009|gb|FK965792.1|FK965792
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211105483|gb|FK965773.1|FK965773
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211105479|gb|FK965769.1|FK965769
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         T
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccag-
EST: gi|211105479|gb|FK965769.1|FK965769
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         T
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccag-
EST: gi|211202572|gb|FK965807.1|FK965807
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211103007|gb|FK965759.1|FK965759
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         T
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccag-
EST: gi|211103007|gb|FK965759.1|FK965759
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         T
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccag-
EST: gi|211103005|gb|FK965757.1|FK965757
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211202570|gb|FK965805.1|FK965805
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211105480|gb|FK965770.1|FK965770
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCAYCGA                         T
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccag-
EST: gi|211105480|gb|FK965770.1|FK965770
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCAYCGA                         T
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccag-
EST: gi|211202571|gb|FK965806.1|FK965806
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCAGGGACAGGAGAGTACAACAAATTCTACGGTGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211200007|gb|FK965790.1|FK965790
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211205145|gb|FK965820.1|FK965820
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         T
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccag-
EST: gi|211205145|gb|FK965820.1|FK965820
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         T
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccag-
EST: gi|211105487|gb|FK965777.1|FK965777
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211105490|gb|FK965780.1|FK965780
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211200008|gb|FK965791.1|FK965791
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211105476|gb|FK965766.1|FK965766
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211202563|gb|FK965798.1|FK965798
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCAGGGACAGGAGAGTACAACAAATTCTACGGTGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211202575|gb|FK965810.1|FK965810
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211105481|gb|FK965771.1|FK965771
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211200003|gb|FK965786.1|FK965786
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211103013|gb|FK965765.1|FK965765
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211202573|gb|FK965808.1|FK965808
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
EST: gi|211202566|gb|FK965801.1|FK965801
EST:     GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA                         GTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA
genomic: GTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 220

CAATGGCGTCGGGGAACAACAACAAGCAGAGGAGCGAGGAGGAGTGGCGCGTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAACTGCGCTGGCTGCGGGACTCCCCTGTACAAGTCCGCCACAAAATTTGAT


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 439

CAATGGCGTCGGGGAACAACAACAAGCAGAGGAGCGAGGAGGAGTGGCGCGTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAACTGCGCTGGCTGCGGGACTCCCCTGTACAAGTCCGCCACAAAATTTGAT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 407

CAATGGCGTCGGGGAACAACAACAAGCAGAGGAGCGAGGAGGAGTGGCGCGTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAACTGCGCTGGCTGCGGGACTCCCCTGTACAAGTCCGCCACAAAATTTGAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 436

CAATGGCGTCGGGGAACAACAACAAGCAGAGGAGCGAGGAGGAGTGGCGCGTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactc ... tgatgtccagGTTACCCGGGACAGGAGAGTACAACAAATTCTACGGCGACGGGGTTTATAACTGCGCTGGCTGCGGGACTCCCCTGTACAAGTCCGCCACAAAATTTGAT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAATGGCGTCGGGGAACAACAACAAGCAGAGGAGCGAGGAGGAGTGGCGCGTCGTACTCTCCCCTGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAgttagtactctaccttctctcctctcttccccccctaagcgactgccactgtgagtctgacgattcatatttggctgaggttgctgttgttcctctgatc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccccc