1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgattaattattggattggtgataaccacagttgttcacttgcatatttgagtgcataccataaatcaagccttttcttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTACAAAG
species | Zea mays |
transcript | GRMZM2G540403_T03 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAG GCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTACEST: gi|32935002|gb|CF039814.1|CF039814
genomic: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAGgtgattaatt ... cttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
EST: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAG GCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTACEST: gi|211096941|gb|FL476436.1|FL476436
genomic: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAGgtgattaatt ... cttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
EST: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAG GCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTACEST: gi|32929640|gb|CF034452.1|CF034452
genomic: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAGgtgattaatt ... cttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
EST: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAG GCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTACEST: gi|71422924|gb|DR805897.1|DR805897
genomic: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAGgtgattaatt ... cttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
EST: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAG GCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
genomic: TTGCGAAACTTGGTGCAACCGTCGTTACGTATCCCCTTCTAGTTGTTAAGgtgattaatt ... cttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTAC
ttgttcacttgcatatttgagtgcataccataaatcaagccttttcttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTACAAAG
ccttttcttcgtgc CT-rich tract
ataaatcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattaattattggattggtgataaccacagttgttcacttgcatatttgagtgcataccataaatcaagccttttcttcgtgcagGCAAGACTTCAGGCAAAGCACATGATTAACGATGACAAGAGGCATCGCTACAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG