1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttggttcattcgccagcttcgttccccactttgtgaaggttgagacgcttctgaatctttgctcgttgtgttactgtcagGGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGGGCCCTTGAGCGATCCAGGAGAGGGCTTGGCGATGGGTCTGTCGGCATGC
species | Zea mays |
transcript | GRMZM2G540403_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAG GGTGTCTACTACTACTTCTACCAAATATCCCGGAACAGGGCCGAGGCAAGGEST: gi|78112113|gb|DV530509.1|DV530509
genomic: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAGgttggttcat ... ttactgtcagGGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGG
EST: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAG GGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGGEST: gi|149071944|gb|EE160331.2|EE160331
genomic: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAGgttggttcat ... ttactgtcagGGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGG
EST: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAG GGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGGEST: gi|78120502|gb|DV538886.1|DV538886
genomic: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAGgttggttcat ... ttactgtcagGGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGG
EST: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAG GGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGGEST: gi|88756340|gb|DY540481.1|DY540481
genomic: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAGgttggttcat ... ttactgtcagGGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGG
EST: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAG GGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGGEST: gi|148952677|gb|EC898511.2|EC898511
genomic: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAGgttggttcat ... ttactgtcagGGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGG
EST: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAG GGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGGEST: gi|91877627|gb|EB407584.1|EB407584
genomic: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAGgttggttcat ... ttactgtcagGGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGG
EST: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAG GGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGGEST: gi|211175056|gb|FL087597.1|FL087597
genomic: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAGgttggttcat ... ttactgtcagGGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGG
EST: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAG GGTGTCTACTACTACTTCTACCAAATAEST: gi|8367157|gb|BE050102.1|BE050102
genomic: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAGgttggttcat ... ttactgtcagGGTGTCTACTACTACTTCTACCAAATA
EST: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAG GGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGGEST: gi|71766550|gb|DR964487.1|DR964487
genomic: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAGgttggttcat ... ttactgtcagGGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGG
EST: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAG GGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGGEST: gi|148964459|gb|EC905815.2|EC905815
genomic: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAGgttggttcat ... ttactgtcagGGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGG
EST: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAG GGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGGEST: gi|76936044|gb|DV174582.1|DV174582
genomic: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAGgttggttcat ... ttactgtcagGGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGG
EST: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAG GGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGGEST: gi|148957275|gb|EC903307.2|EC903307
genomic: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAGgttggttcat ... ttactgtcagGGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGG
EST: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAG GGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGGEST: gi|149027549|gb|EE046558.2|EE046558
genomic: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAGgttggttcat ... ttactgtcagGGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGG
EST: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAG GGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGGEST: gi|211175053|gb|FL087594.1|FL087594
genomic: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAGgttggttcat ... ttactgtcagGGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGG
EST: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAG GGTGTCTACTACTACTTCTACCAAATATTCCGGAACAEST: gi|71422924|gb|DR805897.1|DR805897
genomic: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAGgttggttcat ... ttactgtcagGGTGTCTACTACTACTTCTACCAAATATTCCGGAACA
EST: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAG GGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGGEST: gi|149013466|gb|EE042980.2|EE042980
genomic: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAGgttggttcat ... ttactgtcagGGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGG
EST: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAG GGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGGEST: gi|71448089|gb|DR829139.1|DR829139
genomic: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAGgttggttcat ... ttactgtcagGGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGG
EST: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAG GGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGGEST: gi|78121537|gb|DV539921.1|DV539921
genomic: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAGgttggttcat ... ttactgtcagGGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGG
EST: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAG GGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGGEST: gi|91051844|gb|EB162262.1|EB162262
genomic: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAGgttggttcat ... ttactgtcagGGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGG
EST: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAG GGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGGEST: gi|211175055|gb|FL087596.1|FL087596
genomic: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAGgttggttcat ... ttactgtcagGGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGG
EST: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAG GGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGG
genomic: GCCTGTATGGCGGGCTTATGCCCTCTCTCGTCGGCACCGCTGCCTCCCAGgttggttcat ... ttactgtcagGGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGG
ccactttgtgaaggttgagacgcttctgaatctttgctcgttgtgttactgtcagGGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGGGCCCTTGAGCGATCCAGGAGAGGGCTTGGCGATGGGTCTGTCGGCATGC
aatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggttcattcgccagcttcgttccccactttgtgaaggttgagacgcttctgaatctttgctcgttgtgttactgtcagGGTGTCTACTACTACTTCTACCAAATATTCCGGAACAGGGCCGAGGCAAGGGCCCTTGAGCGATCCAGGAGAGGGCTTGGCGATGGGTCTGTCGGCATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG