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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTGGCAAAGCAACAGATGGATCTTCTCACAGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAGgtaatttgatccattgaaggctaattttaatctgttgtgtcacgttgtataatatattctttctttaatgaaagtttacacaatttttttcttgaacatg...

Basic information

species Zea mays
transcript GRMZM2G524711_T02
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148940531|gb|EC885332.2|EC885332
EST:     AGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAG                         GTTGTGAAATTAAGCATACAAAATAGCCTTCCTTTTGAGTACACACGCATG
genomic: AGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAGgtaatttgat ... taatttacagGTTGTGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTACACACGCATG
EST: gi|5847165|gb|AW000244.1|AW000244
EST:     TTCTCACAGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAG                         GTTGTGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTACACACGCATG
genomic: TTCTCACAGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAGgtaatttgat ... taatttacagGTTGTGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTACACACGCATG
EST: gi|211472157|gb|FK973006.1|FK973006
EST:     TTCTCACAGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAG                         GTTGTGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTACACACGCATG
genomic: TTCTCACAGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAGgtaatttgat ... taatttacagGTTGTGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTACACACGCATG
EST: gi|18178845|gb|BM380055.1|BM380055
EST:     CAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAG                         GTTGTGAAATTAAGCATACAAAATAGCCTTCCTTTTGAGTACACACGCCAT
genomic: CAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAGgtaatttgat ... taatttacagGTTGTGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTACACACG-CAT
EST: gi|211107954|gb|FL121656.1|FL121656
EST:     TTCTCACAGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAG                         GTTGTGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTACACACGCATG
genomic: TTCTCACAGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAGgtaatttgat ... taatttacagGTTGTGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTACACACGCATG
EST: gi|60357105|gb|DN224078.1|DN224078
EST:     TTCTCACAGCAAAAGCATGGCTTATGGAGAATAAGGAGCTTGAGCGAAAG                         GTTGTGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTACACACGCATG
genomic: TTCTCACAGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAGgtaatttgat ... taatttacagGTTGTGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTACACACGCATG
EST: gi|148932235|gb|EC875748.2|EC875748
EST:     TTCTCACAGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAG                         GTTGTGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTACACACGCATG
genomic: TTCTCACAGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAGgtaatttgat ... taatttacagGTTGTGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTACACACGCATG
EST: gi|6031472|gb|AW076374.1|AW076374
EST:     TTCTCACAGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAG                         GTTGNGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTACACACGCATG
genomic: TTCTCACAGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAGgtaatttgat ... taatttacagGTTGTGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTACACACGCATG
EST: gi|50333517|gb|CO528643.1|CO528643
EST:     TTCTCACAGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAG                         GTTGTGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTACACACGCATG
genomic: TTCTCACAGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAGgtaatttgat ... taatttacagGTTGTGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTACACACGCATG
EST: gi|211073294|gb|FL472749.1|FL472749
EST:     TTCTCACAGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAG                         GTTGTGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTACACACGCATG
genomic: TTCTCACAGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAGgtaatttgat ... taatttacagGTTGTGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTACACACGCATG
EST: gi|78022397|gb|DV490784.1|DV490784
EST:     TTCTCACAGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAG                         GTTGTGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTACACACGCATG
genomic: TTCTCACAGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAGgtaatttgat ... taatttacagGTTGTGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTACACACGCATG
EST: gi|31362466|gb|CD446823.1|CD446823
EST:     TTCTCACAGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAG                         GTTGTGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTACACACGCATG
genomic: TTCTCACAGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAGgtaatttgat ... taatttacagGTTGTGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTACACACGCATG
EST: gi|60356608|gb|DN223581.1|DN223581
EST:     TTCTCACAGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAG                         GTTGTGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTACACACGCATG
genomic: TTCTCACAGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAGgtaatttgat ... taatttacagGTTGTGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTACACACGCATG
EST: gi|32832624|gb|CD972302.1|CD972302
EST:     TTCTCACAGCAAAAGCATGGCTTATGGAGAATAAGGAGCTTGAGCGAAAG                         GTTGTGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTA
genomic: TTCTCACAGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAGgtaatttgat ... taatttacagGTTGTGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTA
EST: gi|149090385|gb|EE179694.2|EE179694
EST:     TTCTCACAGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAG                         GTTGTGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTACACACGCATG
genomic: TTCTCACAGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAGgtaatttgat ... taatttacagGTTGTGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTACACACGCATG
EST: gi|60395915|gb|DN228785.1|DN228785
EST:     TTCTCACAGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAG                         GTTGTGAAATTAAGCATACAAAATAGCCTTCTTTCTGAGTACACACGCATG
genomic: TTCTCACAGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAGgtaatttgat ... taatttacagGTTGTGAAATTAAGCATACAAAATAGCCTTCCTTCTGAGTACACACGCATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATTGGCAAAGCAACAGATGGATCTTCTCACAGCAAAAGCATGGCTTATGGAGAACAAGGAGCTTGAGCGAAAGgtaatttgatccattgaaggctaattttaatctgttgtgtcacgttgtataatatattctttctttaatgaaagtttacacaatttttttcttgaacatg

- - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgaaag