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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAATTGAGGGTCGAATGCTTCAATGGTTCCAGAAAGCTTCAAGCACAATAGTGTCAAATGTTTCCATTGATGCCATAAAGCATATTCAAGATTTTGAAgtgagtaatttttagtgtattttcacttttctgtggctgcctgtgcaagagcaacttatgtaattaccttttctattgtcctgaactcctgatgataaga...

Basic information

species Zea mays
transcript GRMZM2G524711_T02
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211472157|gb|FK973006.1|FK973006
EST:     TAGTGTCAAATGTTTCCATTGATGCCATAAAGCATATTCAAGATTTTGAA                         GTGGATTCTGTATATATTCCAGACATTTCAGCAAAATATCCATTGTGTGTT
genomic: TAGTGTCAAATGTTTCCATTGATGCCATAAAGCATATTCAAGATTTTGAAgtgagtaatt ... ttccaaccagGTGGATTCTGTATATATTCCAGACATTTCAGCAAAATATCCATTGTGTGTT
EST: gi|148932235|gb|EC875748.2|EC875748
EST:     TAGTGTCAAATGTTTCCATTGATGCCATAAAGCATATTCAAGATTTTGAA                         GTGGATTCTGTATATATTCCAGACATTTCAGCAAAATATCCATTGTGTGTT
genomic: TAGTGTCAAATGTTTCCATTGATGCCATAAAGCATATTCAAGATTTTGAAgtgagtaatt ... ttccaaccagGTGGATTCTGTATATATTCCAGACATTTCAGCAAAATATCCATTGTGTGTT
EST: gi|31362466|gb|CD446823.1|CD446823
EST:     GCCATAAAGCATATTCAAGATTTTGAA                         GTGGATTCTGTATATATTCCAGACATTTCAGCAAAATATCCATTGTGTGTT
genomic: GCCATAAAGCATATTCAAGATTTTGAAgtgagtaatt ... ttccaaccagGTGGATTCTGTATATATTCCAGACATTTCAGCAAAATATCCATTGTGTGTT