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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAGgtacggtgagctgttctcgtcatttcgatgctagtaccattatattgttgttgttgtcagcaatgacgagaatgatccaggctaatttaaagcaaagcgatccatgaactggtggtcag

Basic information

species Zea mays
transcript GRMZM2G471269_T06
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71762617|gb|DR960554.1|DR960554
EST:     ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAG                         GGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
genomic: ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAGgtacggtgag ... tggtggtcagGGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
EST: gi|5108189|gb|AI739902.1|AI739902
EST:     ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAG                         GGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
genomic: ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAGgtacggtgag ... tggtggtcagGGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
EST: gi|78027468|gb|DV495855.1|DV495855
EST:     TGGGATCAAGAAG                         GGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
genomic: TGGGATCAAGAAGgtacggtgag ... tggtggtcagGGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
EST: gi|78120814|gb|DV539198.1|DV539198
EST:     ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAG                         GGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
genomic: ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAGgtacggtgag ... tggtggtcagGGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
EST: gi|148949256|gb|EC894699.2|EC894699
EST:     ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAG                         GGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
genomic: ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAGgtacggtgag ... tggtggtcagGGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
EST: gi|14203015|gb|BG836692.1|BG836692
EST:     ATTTCTGGGCGAACGATGAACGMACTCGMACAGCTCTTGGGATCAAGAAG                         GGMACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGMCCTGCCGTAMACG
genomic: ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAGgtacggtgag ... tggtggtcagGGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
EST: gi|78083939|gb|DV512332.1|DV512332
EST:     ATTTTTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAG                         GGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
genomic: ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAGgtacggtgag ... tggtggtcagGGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
EST: gi|211231289|gb|FL464293.1|FL464293
EST:     ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAG                         GGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
genomic: ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAGgtacggtgag ... tggtggtcagGGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
EST: gi|88750452|gb|DY534593.1|DY534593
EST:     GAACGCACTCGAACAGCTCTTGGGATCAAGAAG                         GGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
genomic: GAACGCACTCGAACAGCTCTTGGGATCAAGAAGgtacggtgag ... tggtggtcagGGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
EST: gi|5069690|gb|AI737655.1|AI737655
EST:     ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAG                         GGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
genomic: ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAGgtacggtgag ... tggtggtcagGGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
EST: gi|8401242|gb|BE056876.1|BE056876
EST:     ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAG                         GGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
genomic: ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAGgtacggtgag ... tggtggtcagGGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
EST: gi|71299116|gb|DR785562.1|DR785562
EST:     ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTTTTGGGATCAAGAAG                         GGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
genomic: ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAGgtacggtgag ... tggtggtcagGGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
EST: gi|211175969|gb|FL481229.1|FL481229
EST:     ACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAG                         GGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
genomic: ACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAGgtacggtgag ... tggtggtcagGGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
EST: gi|74233921|gb|DT641835.1|DT641835
EST:     ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAG                         GGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
genomic: ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAGgtacggtgag ... tggtggtcagGGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
EST: gi|110516814|gb|EE021401.1|EE021401
EST:     CACTCGAACAGCTCTTGGGATCAAGAAG                         GGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
genomic: CACTCGAACAGCTCTTGGGATCAAGAAGgtacggtgag ... tggtggtcagGGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
EST: gi|78026574|gb|DV494961.1|DV494961
EST:     ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAG                         GGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
genomic: ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAGgtacggtgag ... tggtggtcagGGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
EST: gi|78125073|gb|DV543457.1|DV543457
EST:     ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAG                         GGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
genomic: ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAGgtacggtgag ... tggtggtcagGGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
EST: gi|148966524|gb|EE017546.2|EE017546
EST:     ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAG                         GGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
genomic: ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAGgtacggtgag ... tggtggtcagGGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
EST: gi|37397736|gb|CF636176.1|CF636176
EST:     ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAG                         GGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
genomic: ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAGgtacggtgag ... tggtggtcagGGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
EST: gi|40337181|gb|CK371251.1|CK371251
EST:     ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAG                         GGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG
genomic: ATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAGgtacggtgag ... tggtggtcagGGAACAGTGGACGAGTGGGTGAGGTGTCACGACGCAGACCTGCCGTACACG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAGgtacggtgagctgttctcgtcatttcgatgctagtaccattatattgttgttgttgtcagcaatgacgagaatgatccaggctaatttaaagcaaagcgatccatgaactggtggtcag

- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG