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gtgagtccactgcatgcacatgcatctacagatgaagcacctctctgctcagtgctgatgtactactagctaaaaccgacttgcatattgcagACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAG
species | Zea mays |
transcript | GRMZM2G471269_T06 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAGGGGCGACGCTGAACCATCCGCCAGCTCGTCCTCGGTTTGGCTGCATC ACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCGAEST: gi|78120814|gb|DV539198.1|DV539198
genomic: GAGGGGCGACGCTGAACCATCCGCCAGCTCGTCCTCGGTTTGGCTGCATCgtgagtccac ... catattgcagACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCGA
EST: GAGGGGCGACGCTGAACCATCCGCCAGCTCGTCCTCGGTTTGGCTGCATC ACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCGAEST: gi|148949256|gb|EC894699.2|EC894699
genomic: GAGGGGCGACGCTGAACCATCCGCCAGCTCGTCCTCGGTTTGGCTGCATCgtgagtccac ... catattgcagACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCGA
EST: GAGGGGGGACGCTGAACCATCCGCCAGCTCGTCCTCGGTTTGGGTGCATC ACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCGAEST: gi|14203015|gb|BG836692.1|BG836692
genomic: GAGGGGCGACGCTGAACCATCCGCCAGCTCGTCCTCGGTTTGGCTGCATCgtgagtccac ... catattgcagACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCGA
EST: AGGGGCGACGCTGAACCATCCGCCAGCTCGTCCTCGGTTTGGCTGCANTM A-CTACGGCTACTMCCTGTCGTATTTCTGGGCGAACGATGAACGMACTCGEST: gi|78083939|gb|DV512332.1|DV512332
genomic: AGGGGCGACGCTGAACCATCCGCCAGCTCGTCCTCGGTTTGGCTGCA-TCgtgagtccac ... catattgcagACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCG
EST: GAGGGGGGACGCTGAACCATCCGCCAGCTCGTCCTCGGTTTGGGTGCATC ACCTACGGCTACTACCTGTCGTATTTTTGGGCGAACGATGAACGCACTCGAEST: gi|5069690|gb|AI737655.1|AI737655
genomic: GAGGGGCGACGCTGAACCATCCGCCAGCTCGTCCTCGGTTTGGCTGCATCgtgagtccac ... catattgcagACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCGA
EST: CTCGGTTTGGCTGCATC ACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCGAEST: gi|8401242|gb|BE056876.1|BE056876
genomic: CTCGGTTTGGCTGCATCgtgagtccac ... catattgcagACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCGA
EST: TGAACCATCCGCCAGCTCGTCCTCGGTTTGGCTGCATC ACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCGAEST: gi|71299116|gb|DR785562.1|DR785562
genomic: TGAACCATCCGCCAGCTCGTCCTCGGTTTGGCTGCATCgtgagtccac ... catattgcagACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCGA
EST: GAGGGGCGACGCTGAACCATCCGCCAGCTCGTCCTCGGTTTGGCTGCATC ACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCGAEST: gi|74233921|gb|DT641835.1|DT641835
genomic: GAGGGGCGACGCTGAACCATCCGCCAGCTCGTCCTCGGTTTGGCTGCATCgtgagtccac ... catattgcagACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCGA
EST: GAGGGGCGACGCTGAACCATCCGCCAGCTCGTCCTCGGTTTGGCTGCATC ACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCGAEST: gi|78125073|gb|DV543457.1|DV543457
genomic: GAGGGGCGACGCTGAACCATCCGCCAGCTCGTCCTCGGTTTGGCTGCATCgtgagtccac ... catattgcagACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCGA
EST: CAGCTCGTCCTCGGTTTGGCTGCATC ACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCGAEST: gi|148966524|gb|EE017546.2|EE017546
genomic: CAGCTCGTCCTCGGTTTGGCTGCATCgtgagtccac ... catattgcagACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCGA
EST: GAGGGGCGACGCTGAACCATCCGCCAGCTCGTCCTCGGTTTGGCTGCATC ACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCGAEST: gi|37397736|gb|CF636176.1|CF636176
genomic: GAGGGGCGACGCTGAACCATCCGCCAGCTCGTCCTCGGTTTGGCTGCATCgtgagtccac ... catattgcagACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCGA
EST: GAGGGGCGACGCTGAACCATCCGCCAGCTCGTCCTCGGTTTGGCTGCATC ACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCGAEST: gi|40337181|gb|CK371251.1|CK371251
genomic: GAGGGGCGACGCTGAACCATCCGCCAGCTCGTCCTCGGTTTGGCTGCATCgtgagtccac ... catattgcagACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCGA
EST: GAGGGGCGACGCTGAACCATCCGCCAGCTCGTCCTCGGTTTGGCTGCATC ACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCGA
genomic: GAGGGGCGACGCTGAACCATCCGCCAGCTCGTCCTCGGTTTGGCTGCATCgtgagtccac ... catattgcagACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCGA
acctctctgctcagtgctgatgtactactagctaaaaccgacttgcatattgcagACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAG
agctaaa putative branch site (score: 3)
taaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtccactgcatgcacatgcatctacagatgaagcacctctctgctcagtgctgatgtactactagctaaaaccgacttgcatattgcagACCTACGGCTACTACCTGTCGTATTTCTGGGCGAACGATGAACGCACTCGAACAGCTCTTGGGATCAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG