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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGAATACTCAGTTAATGTCATGAAGCATATTTTTGATGGACACGTTGTGCTCCAATACAACTGTACCAATACAATTCCTGAACAATTGCTTGAACAGgtatgtaacttattttgtgcataggtttaaaagcctttagacaggttactgttttttgttgatgcttctgaggctgatgaatttttagaagttgcttcgaagcctttagaattattgccatatgattctcctgggcag

Basic information

species Zea mays
transcript GRMZM2G459437_T01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G459437_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os07g10150.1 (Oryza sativa), 5'ss of exon 15
GACTGAATACTCAGTTAATGTCATGAAGCATATTTTTGATGGACACGTTGTGCTCCAATACAACTGTACCAATACAATTCCTGAACAATTGCTTGAACAGgtatgtaacttattttgtgcataggtttaaaagcctttagacaggttactgttttttgttgatgcttctgaggctgatgaatttttagaagttgcttcgaagcctttagaattattgccatatgattctcctgggcag
 |||||||| ||||| |||||  ||||||| |||| ||| || || ||||||||||||||||| ||||||||||| || ||||||||  |||||||| |||||    | || ||     ||    ||| |     | | ||   ||  || ||| |     ||| || |    | |                                                              
AACTGAATATTCAGTCAATGTTGTGAAGCACATTTATGACGGGCATGTTGTGCTCCAATACAATTGTACCAATACTATACCTGAACAGCTGCTTGAAGAGgtaaacgattttttccactcagtattttta---tttatggattagt-gct-tttctgaacaatgtttttatttcag--------------------------------------------------------------

upper sequence: GRMZM2G459437_T01 (Zea mays), 5'ss of exon 3
lower sequence: Vv03s0063g02450.t01 (Vitis vinifera), 5'ss of exon 15
GACTGAATACTCAGTTAATGTCATGAAGCATATTTTTGATGGACACGTTGTGCTCCAATACAACTGTACCAATACAATTCCTGAACAATTGCTTGAACAGgtatgtaacttattttgtgcataggtttaaaagcctttagacaggttactgttttttgttgatgcttctgaggctgatgaatttttagaagttgcttcgaagcctttagaattattgccatatgattctcctgggcag
 || |||||  | ||||||||  | ||||| ||||||||| | || |||||| |||| |||||||| ||||||||||||||||| |||||||| ||| | |||  | ||  |||| |   | || |  |     ||| |      || |||   ||  | |   ||||      |  | | ||||    | ||| || | ||                                    
AACAGAATATGCTGTTAATGTTGTCAAGCACATTTTTGATAGGCATGTTGTGTTCCAGTACAACTGCACCAATACAATTCCTGAGCAATTGCTGGAAAATgta-atgaccaatttag--aacagctgca-----cttcatgt---tttctgaccttactcgggacttcca----ttgtaacttttctatacttg-ttggcag------------------------------------