Sequence
atgc intronic sequence ATGC exonic sequence...taaggttggtatatattacttgtccttctatggaagatgagcattatggacctgactgaatctcatttgatgtgctgtaactttttgttcgcacttccagTCAGCTGCACCTGTAGAATTGACTGAAGCTGAGACTGAATACTCAGTTAATGTCATGAAGCATATTTTTGATGGACACGTTGTGCTCCAATACAACTGTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G459437_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os07g10150.1 (Oryza sativa), 3'ss of exon 14
-taaggttggtatatattacttgtccttctatggaagatgagcattatggacctgactgaatctcatttgatgtgctgtaactttttgttcgcacttccagTCAGCTGCACCTGTAGAATTGACTGAAGCTGAGACTGAATACTCAGTTAATGTCATGAAGCATATTTTTGATGGACACGTTGTGCTCCAATACAACTGTA
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gttagcttggtgttcttttattttgttcccactgaaaat-----------atatcactatgttctaccacttatgttttgactttttatcctttttttcagTCATCAGCTCCTGTAGAATTGACCGAAGCTGAAACTGAATATTCAGTCAATGTTGTGAAGCACATTTATGACGGGCATGTTGTGCTCCAATACAATTGTA
upper sequence: GRMZM2G459437_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA04G01470.1 (Glycine max), 3'ss of exon 14
taaggttggtatatattacttgtccttctatggaagatgagcattatggacctgactgaatctcatttgatgtgctgtaactttttgttcgcacttccagTCAGCTGCACCTGTAGAATTGACTGAAGCTGAGACTGAATACTCAGTTAATGTCATGAAGCATATTTTTGATGGACACGTTGTGCTCCAATACAACTGTA
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---------------gttctttcacttgattctgctccgacaattctatattttatgtagttcttttctatat-ctaaaatgtattttttt--ttaccagTCCTCAGCACCTGTGGAGCTCACTGAAGCTGAGACAGAATATGCAGTTAATGTCATTAAACACATTTTTGATAGGCATGTTGTGTTCCAGTACAACTGCA
upper sequence: GRMZM2G459437_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA06G01520.1 (Glycine max), 3'ss of exon 14
taaggttggtatatattacttgtccttctatggaagatgagcattatggacctgactgaatctcatttgatgtgctgtaactttttgttcgcacttccagTCAGCTGCACCTGTAGAATTGACTGAAGCTGAGACTGAATACTCAGTTAATGTCATGAAGCATATTTTTGATGGACACGTTGTGCTCCAATACAACTGTA
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----gttctttcac-ttgtttctgctcccaca-attctatattttatgtagttcttt---ctgtatctaatgtggtatgtattttgatattttttaccagTCCTCAGCACCCGTGGAGCTCACTGAAGCTGAGACAGAATATGCTGTTAATGTCATTAAACACATTTTTGATAGGCATGTTGTGTTCCAGTACAACTGCA
upper sequence: GRMZM2G459437_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA12G04820.1 (Glycine max), 3'ss of exon 14
taaggttggtatatattacttgtccttctatggaagatgagcattatggacctgactga-atctcatttgatgtgctgtaactttttgt-tcgcacttc---cagTCAGCTGCACCTGTAGAATTGACTGAAGCTGAGACTGAATACTCAGTTAATGTCATGAAGCATATTTTTGATGGACACGTTGTGCTCCAATACAACTGTA
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----gttattttacttagttcttgtttcaaaattatatactttatattttctttccttatatactgtaatatgtactatgtattctgatgttgctttcttatcagTCTTCAGAACCTGTGGAGCTTACTGAAGCGGAGACAGAATATGCAGTTAATGTTGTTAAGCACATTTTTGATCGGCATGTTGTGTTTCAATACAACTGCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atggacctgactgaatctcatttgatgtgctgtaactttttgttcgcacttccagTCAGCTGCACCTGTAGAATTGACTGAAGCTGAGACTGAATACTCAGTTAATGTCATGAAGCATATTTTTGATGGACACGTTGTGCTCCAATACAACTGTA
ctgtaac putative branch site (score: 3)
cacttcc putative PPT
taacttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taaggttggtatatattacttgtccttctatggaagatgagcattatggacctgactgaatctcatttgatgtgctgtaactttttgttcgcacttccagTCAGCTGCACCTGTAGAATTGACTGAAGCTGAGACTGAATACTCAGTTAATGTCATGAAGCATATTTTTGATGGACACGTTGTGCTCCAATACAACTGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - -ttacttg
- - - - - - - - - - - - - - - - - - - - - - - -ggacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgctgt