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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCACGTGGTGCACGCCCGCCAGCTTGGACGCCGCGCCCACCACGCCGGCCAGGATGGCGAACACCAGGAAGTAGAACGTCGCGCCGTTGCCGGCCACGCctgcgtgcaatgcaacgcaatgcgcatcagaggcgcgccatgcatatcgatgcatgagtatatgcatgatgcgtgattactactggcctttcttacgtac

Basic information

species Zea mays
transcript GRMZM2G458364_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6626359|gb|AW257891.1|AW257891
EST:     CAGGATGGCGAACACCAGNAAGTAGAACGTCGCGCCGTTGCCGGCCACGC                         CGGGGTAGTTGGTCTGNCCGTTGATGAAGTGGTTCAGGTTCCAGCTCGCGA
genomic: CAGGATGGCGAACACCAGGAAGTAGAACGTCGCGCCGTTGCCGGCCACGCctgcgtgcaa ... tcttacgtacCGGGGTAGTTGGTCTGCCCGTTGATGAAGTGGTTCAGGTTCCAGCTCGCGA
EST: gi|18659756|gb|BM500506.1|BM500506
EST:     CAGGATGGCGAACACCAGGAAGTAGAACGTCGCGCCGTTGCCGGCCACGC                         CGGGGTAGTTGGTCTGCCCGTTGATGAAGTGGTTCAGGTTCCAGCTCGCGA
genomic: CAGGATGGCGAACACCAGGAAGTAGAACGTCGCGCCGTTGCCGGCCACGCctgcgtgcaa ... tcttacgtacCGGGGTAGTTGGTCTGCCCGTTGATGAAGTGGTTCAGGTTCCAGCTCGCGA
EST: gi|211493309|gb|FL153465.1|FL153465
EST:     CAGGATGGCGAACACCAGGAAGTAGAACGTCGCGCCGTTGCCGGCCACGC                         CGGGGTAGTTGGTCTGCCCGTTGATGAAGTGGTTCAGGTTNCAGCTCGCGA
genomic: CAGGATGGCGAACACCAGGAAGTAGAACGTCGCGCCGTTGCCGGCCACGCctgcgtgcaa ... tcttacgtacCGGGGTAGTTGGTCTGCCCGTTGATGAAGTGGTTCAGGTTCCAGCTCGCGA
EST: gi|211490429|gb|FL153459.1|FL153459
EST:     CAGGATGGCGAACACCAGGAAGTAGAACGTCGCGCCGTTGCCGGCCACGC                         CGGGGTAGTTGGTCTGCCCGTTGATGAAGTGGTTCAGGTTCCAGCTCGCGA
genomic: CAGGATGGCGAACACCAGGAAGTAGAACGTCGCGCCGTTGCCGGCCACGCctgcgtgcaa ... tcttacgtacCGGGGTAGTTGGTCTGCCCGTTGATGAAGTGGTTCAGGTTCCAGCTCGCGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCACGTGGTGCACGCCCGCCAGCTTGGACGCCGCGCCCACCACGCCGGCCAGGATGGCGAACACCAGGAAGTAGAACGTCGCGCCGTTGCCGGCCACGCctgcgtgcaatgcaacgcaatgcgcatcagaggcgcgccatgcatatcgatgcatgagtatatgcatgatgcgtgattactactggcctttcttacgtac

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