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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ctgcgtgcaatgcaacgcaatgcgcatcagaggcgcgccatgcatatcgatgcatgagtatatgcatgatgcgtgattactactggcctttcttacgtacCGGGGTAGTTGGTCTGCCCGTTGATGAAGTGGTTCAGGTTCCAGCTCGCGAAGCCGATGACGATGATGTACATGATGAGGTTGAGCACCAGGAGCGGCGC

Basic information

species Zea mays
transcript GRMZM2G458364_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6626359|gb|AW257891.1|AW257891
EST:     CAGGATGGCGAACACCAGNAAGTAGAACGTCGCGCCGTTGCCGGCCACGC                         CGGGGTAGTTGGTCTGNCCGTTGATGAAGTGGTTCAGGTTCCAGCTCGCGA
genomic: CAGGATGGCGAACACCAGGAAGTAGAACGTCGCGCCGTTGCCGGCCACGCctgcgtgcaa ... tcttacgtacCGGGGTAGTTGGTCTGCCCGTTGATGAAGTGGTTCAGGTTCCAGCTCGCGA
EST: gi|18659756|gb|BM500506.1|BM500506
EST:     CAGGATGGCGAACACCAGGAAGTAGAACGTCGCGCCGTTGCCGGCCACGC                         CGGGGTAGTTGGTCTGCCCGTTGATGAAGTGGTTCAGGTTCCAGCTCGCGA
genomic: CAGGATGGCGAACACCAGGAAGTAGAACGTCGCGCCGTTGCCGGCCACGCctgcgtgcaa ... tcttacgtacCGGGGTAGTTGGTCTGCCCGTTGATGAAGTGGTTCAGGTTCCAGCTCGCGA
EST: gi|211493309|gb|FL153465.1|FL153465
EST:     CAGGATGGCGAACACCAGGAAGTAGAACGTCGCGCCGTTGCCGGCCACGC                         CGGGGTAGTTGGTCTGCCCGTTGATGAAGTGGTTCAGGTTNCAGCTCGCGA
genomic: CAGGATGGCGAACACCAGGAAGTAGAACGTCGCGCCGTTGCCGGCCACGCctgcgtgcaa ... tcttacgtacCGGGGTAGTTGGTCTGCCCGTTGATGAAGTGGTTCAGGTTCCAGCTCGCGA
EST: gi|211490429|gb|FL153459.1|FL153459
EST:     CAGGATGGCGAACACCAGGAAGTAGAACGTCGCGCCGTTGCCGGCCACGC                         CGGGGTAGTTGGTCTGCCCGTTGATGAAGTGGTTCAGGTTCCAGCTCGCGA
genomic: CAGGATGGCGAACACCAGGAAGTAGAACGTCGCGCCGTTGCCGGCCACGCctgcgtgcaa ... tcttacgtacCGGGGTAGTTGGTCTGCCCGTTGATGAAGTGGTTCAGGTTCCAGCTCGCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcgatgcatgagtatatgcatgatgcgtgattactactggcctttcttacgtacCGGGGTAGTTGGTCTGCCCGTTGATGAAGTGGTTCAGGTTCCAGCTCGCGAAGCCGATGACGATGATGTACATGATGAGGTTGAGCACCAGGAGCGGCGC
                                            ttcttac  putative branch site (score: 2)
                                         cctttcttac  CT-rich tract
           agtatat  TA-rich tract