Sequence
atgc intronic sequence ATGC exonic sequencegttagtgtttcgatcgccgccggacttacctttcgacatccactgcatgcaatgcgtccctacatatatatggggcgtgccagctagttaagaattaacatgtttgggaaactaaactttggcagGCGTCGCGATCTCGATGGTGAGCGCCAAGGACGGATCGGCCTACGCGTTGGTGCTGGACGCCAAGACGTTCCACGAGATCGCGCGGGCCAAGTTCCCGTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G446858_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g54270.1 (Oryza sativa), 3'ss of exon 4
gttagtgtttcgatcgccgccggacttacctttcgacatccactgcatgcaatgcgtccctacatatatatggggcgtgccagctagttaagaattaacatgtttgggaaactaaactttggcagGCGTCGCGATCTCGATGGTGAGCGCCAAGGACGGATCGGCCTACGCGTTGGTGCTGGACGCCAAGACGTTCCACGAGATCGCGCGGGCCAAGTTCCCGTA
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---------------gttagtgtcaccatctctcctcgttggctgcgt---atacgtacgt-cttggctttgcctcgtttc-gtttgtaataacttgaccaactctgttattga-----tggcagGCGTGGCGATATCGATGGTGAGCGCCAAGGACGGGTCGGGCTATGCGCTGGTGCTGGACGGCAAGACGTTCGAGGAGGTCGCGCGGGCCAAGTTCCC---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|50331776|gb|CO526902.1|CO526902EST: GTCAGAGCCCTTTTTCGTGCCGCGCCCCGGCGCCGTGGAGGAGGACGACG GCGTCGCGATCTCGATGGTGAGCGCCAAGGACGGATCGGCCTACGCGTTGG
genomic: GTCAGAGCCCTTCTTCGTGCCGCGCCCCGGCGCCGTGGAGGAGGACGACGgttagtgttt ... actttggcagGCGTCGCGATCTCGATGGTGAGCGCCAAGGACGGATCGGCCTACGCGTTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggggcgtgccagctagttaagaattaacatgtttgggaaactaaactttggcagGCGTCGCGATCTCGATGGTGAGCGCCAAGGACGGATCGGCCTACGCGTTGGTGCTGGACGCCAAGACGTTCCACGAGATCGCGCGGGCCAAGTTCCCGTA
aactaaa putative branch site (score: 2)
tagttaagaattaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagtgtttcgatcgccgccggacttacctttcgacatccactgcatgcaatgcgtccctacatatatatggggcgtgccagctagttaagaattaacatgtttgggaaactaaactttggcagGCGTCGCGATCTCGATGGTGAGCGCCAAGGACGGATCGGCCTACGCGTTGGTGCTGGACGCCAAGACGTTCCACGAGATCGCGCGGGCCAAGTTCCCGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
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