Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttcgtcctagctaatttgtttatctttcccacgacgactccatttgactctatgtgcgtgtgctattctgaaagagaccagcttgtttgtgcttgcagGATGGCACCTACCTGAGGAACGGGCCGGGCCTGTGGAACCTGGGCGACTACGGCTTCCGGCACCTGTTCGACGGCTACGCCACGCTGGTCCGCGTGTCGT

Basic information

species Zea mays
transcript GRMZM2G446858_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G446858_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g54270.1 (Oryza sativa), 3'ss of exon 1
---gtttcgtcctagctaatttgtttatctttcccacgacgactccatttgactctatgtgcgtgtgctattctgaaagagaccagcttgtttgtgcttgcagGATGGCACCTACCTGAGGAACGGGCCGGGCCTGTGGAACCTGGGCGACTACGGCTTCCGGCACCTGTTCGACGGCTACGCCACGCTGGTCCGCGTGTCGT
    |   |       ||||||||   || ||     || |    |   |   || | |||| ||    ||  |  |   || |      |   |||| |||||||||||| |||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
aagctcgtggatagattaatttgtcggtcgttaattagaggtggacggatttgtcgacgtgc-tgcaa-atgattgatcggatcgatgcatacttgct-gcagGATGGCACGTACCTGAGGAACGGCCCGGGACTATGGAACCTCGGCGACTACGGCTTCCGGCACCTGTTCGACGGCTACGCGACGCTGGTGCGCGTCTCGT

upper sequence: GRMZM2G446858_T02 (Zea mays), 3'ss of exon 1
lower sequence: Vv04s0008g03380.t01 (Vitis vinifera), 3'ss of exon 1
---gtttcgtcctagctaatttgtttatctttcccacgacg-actccatttgactcta-tgtgcgtgtgctattctgaaagagaccagcttgtttgtgcttgcagGATGGCACCTACCTGAGGAACGGGCCGGGCCTGTGGAACCTGGGCGACTACGGCTTCCGGCACCTGTTCGACGGCTACGCCACGCTGGTCCGCGTGTCGT
    |||  |  ||  |||  | |||   | ||  | |    |    |    ||| || | ||  | |  || | | |     ||   |||| |      ||||| |||| || ||||| |||||||| || ||||||||| || | || || |||  |||||| ||||| ||||||||||||||||| || |||||| |    |
taattttttttttaagtaacatttttcaatatctaatgttataggaaaggaaactataatatgaatata-tagtttaattattac--acttggtcaca--tgcagAATGGGACATACCTAAGGAACGGTCCAGGCCTGTGGCACATAGGAGATTACAACTTCCGCCACCTCTTCGACGGCTACGCCACACTTGTCCGCCTACACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50331777|gb|CO526903.1|CO526903
EST:     AGAGGTGGGAGGGGGCGCTGGAGCTGGAGGGAGAGCTGCCGCTCTGGCTG                         GATGGCACCTACCTGAGGAACGGGCCGGGCCTGTGGAACCTGGGCGACTAC
genomic: AGAGGTGGGAGGGGGCGCTGGAGCTGGAGGGAGAGCTGCCGCTCTGGCTGgtgggtacca ... gtgcttgcagGATGGCACCTACCTGAGGAACGGGCCGGGCCTGTGGAACCTGGGCGACTAC
EST: gi|148962506|gb|EE013371.2|EE013371
EST:     AGAGGTGGGAGGGGGCGCTGGAGCTGGAGGGAGAGCTGCCGCTCTGGCTG                         GATGGCACCTACCTGAGGAACGGGCCGGGCCTGTGGAACCTGGGCGACTAC
genomic: AGAGGTGGGAGGGGGCGCTGGAGCTGGAGGGAGAGCTGCCGCTCTGGCTGgtgggtacca ... gtgcttgcagGATGGCACCTACCTGAGGAACGGGCCGGGCCTGTGGAACCTGGGCGACTAC
EST: gi|148951416|gb|EC897137.2|EC897137
EST:     AGAGGTGGGAGGGGGCGCTGGAGCTGGAGGGAGAGCTGCCGCTCTGGCTG                         GATGGCACCTACCTGAGGAACGGGCCGGGCCTGTGGAACCTGGGCGACTAC
genomic: AGAGGTGGGAGGGGGCGCTGGAGCTGGAGGGAGAGCTGCCGCTCTGGCTGgtgggtacca ... gtgcttgcagGATGGCACCTACCTGAGGAACGGGCCGGGCCTGTGGAACCTGGGCGACTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgactctatgtgcgtgtgctattctgaaagagaccagcttgtttgtgcttgcagGATGGCACCTACCTGAGGAACGGGCCGGGCCTGTGGAACCTGGGCGACTACGGCTTCCGGCACCTGTTCGACGGCTACGCCACGCTGGTCCGCGTGTCGT
 atttgac  putative branch site (score: 4)