Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaacttgtgtacttcataaagcacttcttttccttccaagtctaaatttgatattctttctatttggacag

Basic information

species Zea mays
transcript GRMZM2G439457_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G439457_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g51220.1 (Oryza sativa), 5'ss of exon 5
GTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaacttgtgtacttcataaagcacttcttttccttccaagtctaaatttgatattctttctatttggacag
||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||       ||||||||  | | |||||||  | | ||||      |||||| | ||  | |||| ||||
GTGGCTGACTCACTTGAGAAAGGAACAGAACATGAGGATGAATACATGATTAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtcaa-------acttcatattgtatttcttttggtac-aagta-ggccttgatactattcttgtttgaacag

upper sequence: GRMZM2G439457_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA18G03480.1 (Glycine max), 5'ss of exon 6
GTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtt-tgtgaacttgtgtacttcataaagcactt------------cttttccttc--caagtctaaatttgatattctttctatttggacag
 | ||||| ||||| || || ||||| ||||| || ||||||||||||||||||||||||||||| || || |||  ||  | | |   | |  | || ||    || ||             ||||  |||   ||||    |  | ||     |    |||  | | 
-TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCAGTGAAAAGGAGCTCCTAGTAAACAAGtaatttcagtctctacattttattcgacaattacacatactggattttttgttcattaagtagtgagcttatggatctctgctttataga-

upper sequence: GRMZM2G439457_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA11G34840.1 (Glycine max), 5'ss of exon 6
GTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtt-tgtgaacttgtgtacttcataaagcactt------------cttttccttccaagtctaaatttgatattctttctatttggacag---
|| ||||| ||||| || || ||||| ||||| || ||||||||||||||||||||||||||||| || || |||  ||  |   |   |    | || || |  || ||             ||||  |||      |||   |||  || |   | | ||        
GTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCAGTGAAAAGGAGCTCCTCGTAAACAAgtaattccagtctcgacattttattagacaattacacatactagattttttgttcatcaattaatagtgaggttatggatctctgctttatag

upper sequence: GRMZM2G439457_T02 (Zea mays), 5'ss of exon 6
lower sequence: AT5G58030.1 (Arabidopsis thaliana), 5'ss of exon 5
GTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgt---gaacttgtgtacttcataaa---------gcacttcttttccttccaagtcta--aatttgatattctttctatttggacag
|| ||||| ||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||| ||||| |   |  |  |     | ||||||           | |    ||  ||  | ||| |  ||  |||||     | |    |   ||
GTTGCTGATTCACTTGAAAAAGGAACAGAACATGAAGATGAGTACATGATCAGTGAAAAGGAGCTTCTTGTTAACAGgtttatactgctccagctctttccataaacactctgagataatgtaatttttttaaggtcaagaaaactgataacaaatgtgaaagtgtag

upper sequence: GRMZM2G439457_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv11s0037g00110.t01 (Vitis vinifera), 5'ss of exon 5
GTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgt-----ttgtgaacttgtgtacttcataaagcacttctttt----ccttccaagtctaaatttgatattctttctatttggacag-------------------
|| |||||||||||||| || || || || ||||| |||||||||||||||||||| || ||||| || |||||  |||     ||      |||| ||||   || |  |   || ||    |   | | |  |  |||| ||  |  |||    |  | |                    
GTAGCTGACTCACTTGAGAAAGGTACTGAGCACGAAGATGAATACATGATCAGTGAGAAAGAGCTCCTGGTTAATAGgtaaagatttcattattgtctactatttacattatgcctgttacaactagctaggattgtattttatggtaattcccagtcaatacgcctattcttggtttgcag

upper sequence: GRMZM2G439457_T02 (Zea mays), 5'ss of exon 6
lower sequence: PP1S303_47V6.1 (Physcomitrella patens), 5'ss of exon 5
GTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaa---cttgtgtacttcataaagcacttcttttccttccaagtctaaa--tttgatattctttctatttggacag------------------
||||| || ||  | |||||||| || ||||| || ||||| |||||||||||||| |||||||||||||||||| ||| |||      ||| |   ||| |||          |     |  |    | |    |  || |  |||   ||  |  |                   
GTGGCAGATTCTTTAGAAAAGGGCACGGAACATGAAGATGAGTACATGATCAGTGAGAAGGAGCTTCTTGTTAACAGgtatgtctttccctttttcccttgataggctgggatgtcgatgtttagaattgatgcctcaatttgttttgcgttaaggaaacgaagtgaatgcagattt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211013166|gb|FL234108.1|FL234108
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGKGGAGCTTTTGK
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|9952789|gb|BE639372.1|BE639372
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGNTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGT
EST: gi|32929722|gb|CF034534.1|CF034534
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|22520635|gb|BU079446.1|BU079446
EST:     CATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: CATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|78543983|gb|DV621481.1|DV621481
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|20512936|gb|BQ280122.1|BQ280122
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|21760153|gb|BQ635694.1|BQ635694
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|211015947|gb|FL234123.1|FL234123
EST:     AACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTTGT-AACCG                         TTTC-TTTCTGTGCCAAA
genomic: AACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTT-GTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAA
EST: gi|78025988|gb|DV494375.1|DV494375
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|22520636|gb|BU079447.1|BU079447
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|211436242|gb|FL480988.1|FL480988
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|74234989|gb|DT642903.1|DT642903
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|60395154|gb|DN228023.1|DN228023
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|149090503|gb|EE179813.2|EE179813
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTTTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|32866521|gb|CF006203.1|CF006203
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|149090504|gb|EE179814.2|EE179814
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|28910149|gb|CB331287.1|CB331287
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|5124235|gb|AI745971.1|AI745971
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|149071934|gb|EE160321.2|EE160321
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|60346326|gb|DN213299.1|DN213299
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|74234990|gb|DT642904.1|DT642904
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|60355461|gb|DN222434.1|DN222434
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|22472973|gb|BU037453.1|BU037453
EST:     AACACGAGGATGAATACATGATCAGTGAAAAGGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTG
genomic: AACACGAGGATGAATACATGATCAGTGAAAAGG-AGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTG
EST: gi|71424450|gb|DR806314.1|DR806314
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|87157228|gb|DY402017.1|DY402017
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|211167228|gb|FL234178.1|FL234178
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|211015957|gb|FL234133.1|FL234133
EST:     AACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTNCT-GT-AACCG                         TTTCATTTNCTGTGC-AAA-GACATGGGAGCATTTCA-CTGTGGAGCTTTT
genomic: AACACGAGGATGAATACATGATCAGTGAAAAGGAGCTT-CTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTT-CTGTGCCAAAAGACATGGGAGCATT-CAACTGTGGAGCTTTT
EST: gi|26456825|gb|CA828408.1|CA828408
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|60399125|gb|DN231939.1|DN231939
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|32866520|gb|CF006202.1|CF006202
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|37382943|gb|CF628443.1|CF628443
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|30052365|gb|AI065654.2|AI065654
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|211010393|gb|FL234099.1|FL234099
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|26557481|gb|CA829716.1|CA829716
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|60341828|gb|DN208801.1|DN208801
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|60348498|gb|DN215471.1|DN215471
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|21432407|gb|BQ547897.1|BQ547897
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCCAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|211167225|gb|FL234175.1|FL234175
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGC
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGC
EST: gi|211013175|gb|FL234117.1|FL234117
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAA
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAA
EST: gi|21432154|gb|BQ547644.1|BQ547644
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGNTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTT
EST: gi|149071933|gb|EE160320.2|EE160320
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
EST: gi|20512935|gb|BQ280121.1|BQ280121
EST:     GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAGCCG                         TTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT
genomic: GAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 258

GTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGTTGCGGGCATTGTAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 274

GTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGTTGCGGGCATTGTAAAG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 297

GTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGTTGCGGGCATTGTAAAG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 180

GTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaac ... atttggacagTTTCATTTCTGTGCCAAAAGACATGGGAGCATTCAACTGTGGAGCTTTTGTTGCGGGCATTGTAAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGgtttgtgaacttgtgtacttcataaagcacttcttttccttccaagtctaaatttgatattctttctatttggacag

- - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT