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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atggttgacggtaaatgttaacctgcgatattctttttatcactgaacttcgttcacatgattgtttcttaattctggtagttgctttattatgaaccagGTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG

Basic information

species Zea mays
transcript GRMZM2G439457_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G439457_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g51220.1 (Oryza sativa), 3'ss of exon 4
atggttgacggtaaatgttaacctgcgatattctttttatcactgaacttcgttcacatgattgtttcttaattctggtagttgctttattatgaac------cagGTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG
           |||    | ||||| | ||||  | | |||||| |  |  || | | || || | |  | || ||| |||||||||| |  ||         |||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
------agttataataaatcacctgtgttattagtctgatcactaacttaagtgctcttgtttatatgctgatcctgatagttgctttttcttgttttgttttcagGTGGCTGACTCACTTGAGAAAGGAACAGAACATGAGGATGAATACATGATTAGTGAAAAGGAGCTTCTTGTTAACCG

upper sequence: GRMZM2G439457_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA18G03480.1 (Glycine max), 3'ss of exon 5
atggttgacggtaaatgttaacctgcgatattcttt-ttatcactgaacttcgttcacatgattgtttcttaattctggtagttgctttattatgaaccagGTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG-
||  | |    |   |   ||  ||  |  || |    ||||     | ||      |    |   ||   |  | | ||  ||  ||| |  |  |  |||| ||||| ||||| || || ||||| ||||| || ||||||||||||||||||||||||||||| || || |||   
atactcgtt--tttcttggaatgtgtaaagttgtcagctatcttaatattttagcagctccctaagtttcaatgtattgttttttatttgtcttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCAGTGAAAAGGAGCTCCTAGTAAACAAG

upper sequence: GRMZM2G439457_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA11G34840.1 (Glycine max), 3'ss of exon 5
atggttgacggtaaatgttaacctgcgatattctttttatcactgaacttcgttcacatgattgtttcttaattctggtagttgctttattatgaaccagGTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG
 |  |    || |  ||  ||  ||  |  |   |  ||||       ||      |    |   ||   | || |  |  ||  |||||     |  |||| ||||| ||||| || || ||||| ||||| || ||||||||||||||||||||||||||||| || || |||  
gttttccttggaatgtggaaagttgtcaactatctactatcttaattttttagcagctccctaagtttcaacttatttttatttatttatctaatattagGTTGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCAGTGAAAAGGAGCTCCTCGTAAACAA

upper sequence: GRMZM2G439457_T02 (Zea mays), 3'ss of exon 5
lower sequence: AT5G58030.1 (Arabidopsis thaliana), 3'ss of exon 4
atggttgacggtaaatgttaacctgcgatattctttttatcactgaac---ttcgttcacatgattgtttcttaattctggtagttgctttat---tatgaaccagGTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG
          || | ||   |  |   | ||||  ||  |   |||     |   |  |||||  |||| ||  |||||        ||| |     |||    |||| ||||| ||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||| |
----------gtgagtggcgatttc--aaattcaattagttgttgagtgtttctatcgacatgcctgttcctggattctaactcacacttaacgaacatgccatagGTTGCTGATTCACTTGAAAAAGGAACAGAACATGAAGATGAGTACATGATCAGTGAAAAGGAGCTTCTTGTTAACAG

upper sequence: GRMZM2G439457_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv11s0037g00110.t01 (Vitis vinifera), 3'ss of exon 4
atggttgacggtaaatgttaacctgcgatattctttttatcactgaacttcgttca---catgattgtttcttaattctggtagttgct--ttattatga-accagGTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG
     || |  ||  | || |  |  | ||         | | |||| ||   |||   |||||         |  | |   | || ||  ||  ||| | |  |||| |||||||||||||| || || || || ||||| |||||||||||||||||||| || ||||| || |||||  |
-----tggccatacttcttcatttctgttaaaagaggcctga-tgaatttttatcatgccatgaaatgcagccatctttatcattttctatttgatatcatattagGTAGCTGACTCACTTGAGAAAGGTACTGAGCACGAAGATGAATACATGATCAGTGAGAAAGAGCTCCTGGTTAATAG

upper sequence: GRMZM2G439457_T02 (Zea mays), 3'ss of exon 5
lower sequence: PP1S303_47V6.1 (Physcomitrella patens), 3'ss of exon 4
------------------atggttgacggtaaatgttaacctgcgatattct-ttttatcac-tgaacttcgttcacatgattgtttcttaattctggtagttgctttattatgaac------cagGTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG
                  | | | ||  |    || ||   ||   | |    |||| |||| || | ||   || ||  | |||   || ||| || |   |  | |||| || |       |||||||| || ||  | |||||||| || ||||| || ||||| |||||||||||||| |||||||||||||||||| |
gtttttaacttggcccttacgatcga--gcctctgatagtttggtgtctcaagttttctcacatgtaattgactcgcactaatgtcatttcattttgtttcattttatattttgtattacactcagGTGGCAGATTCTTTAGAAAAGGGCACGGAACATGAAGATGAGTACATGATCAGTGAGAAGGAGCTTCTTGTTAACAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211013166|gb|FL234108.1|FL234108
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|9952789|gb|BE639372.1|BE639372
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|32929722|gb|CF034534.1|CF034534
EST:     ACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: ACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|20512936|gb|BQ280122.1|BQ280122
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|21760153|gb|BQ635694.1|BQ635694
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|26558784|gb|CA831019.1|CA831019
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|211013170|gb|FL234112.1|FL234112
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTCTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|211015947|gb|FL234123.1|FL234123
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|78025988|gb|DV494375.1|DV494375
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|22520636|gb|BU079447.1|BU079447
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|211167219|gb|FL234169.1|FL234169
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTYGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|74234989|gb|DT642903.1|DT642903
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|60395154|gb|DN228023.1|DN228023
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|149090503|gb|EE179813.2|EE179813
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|211165560|gb|FL234156.1|FL234156
EST:     CATTTTATCATTCATCCACAGTACTGTTTGGNAAAGTGTTGTTTGGAAAG                         GTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATC
genomic: CATTTTATCATTCATCCACAGTACTGTTTGG-AAAGTGTTGTTTGGAAAGgtattatgtt ... tatgaaccagGTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATC
EST: gi|32866521|gb|CF006203.1|CF006203
EST:     GGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|149090504|gb|EE179814.2|EE179814
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|28910149|gb|CB331287.1|CB331287
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|211165568|gb|FL234164.1|FL234164
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTYGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|5124235|gb|AI745971.1|AI745971
EST:     GACNCGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|149071934|gb|EE160321.2|EE160321
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|60346326|gb|DN213299.1|DN213299
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|211167220|gb|FL234170.1|FL234170
EST:     CATTTTATCATTCATCCACAGTACTGTTTTGGAAAGTGTTGTTTGGAAAG                         GTGGCTGACTCACTTGAAAAGG
genomic: CATTTTATCATTCATCCACAGTACTGTTT-GGAAAGTGTTGTTTGGAAAGgtattatgtt ... tatgaaccagGTGGCTGACTCACTTGAAAAGG
EST: gi|74234990|gb|DT642904.1|DT642904
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|60355461|gb|DN222434.1|DN222434
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|22472973|gb|BU037453.1|BU037453
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|71424450|gb|DR806314.1|DR806314
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|87157228|gb|DY402017.1|DY402017
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|211167228|gb|FL234178.1|FL234178
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|211165558|gb|FL234154.1|FL234154
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|211015957|gb|FL234133.1|FL234133
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGGTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|26456825|gb|CA828408.1|CA828408
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|211013172|gb|FL234114.1|FL234114
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|60399125|gb|DN231939.1|DN231939
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|32866520|gb|CF006202.1|CF006202
EST:     GGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|37382943|gb|CF628443.1|CF628443
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|30052365|gb|AI065654.2|AI065654
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|211010393|gb|FL234099.1|FL234099
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|26557481|gb|CA829716.1|CA829716
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|211013168|gb|FL234110.1|FL234110
EST:     ACACGACTTCTGGGCATTTTATCATTCACTCCACAGTACTGTTTGGAAAGTGTCGTTTGGAAAG            
genomic: ACACGACTTCTGGGCATTTTATCATTCA-TCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|60341828|gb|DN208801.1|DN208801
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|60348498|gb|DN215471.1|DN215471
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|211010397|gb|FL234103.1|FL234103
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|211015949|gb|FL234125.1|FL234125
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGGTTGGAAAGNTGT-GTTTGGAAAG           
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAG-TGTTGTTTGGAAAGgtattatgtt
EST: gi|21432407|gb|BQ547897.1|BQ547897
EST:     TTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: TTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|211167225|gb|FL234175.1|FL234175
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|211013175|gb|FL234117.1|FL234117
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|211015958|gb|FL234134.1|FL234134
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGGAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|21432154|gb|BQ547644.1|BQ547644
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|149071933|gb|EE160320.2|EE160320
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|20512935|gb|BQ280121.1|BQ280121
EST:     GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAG            
genomic: GACACGACTTCTGGGCATTTTATCATTCATCCACAGTACTGTTTGGAAAGTGTTGTTTGGAAAGgtattatgtt .
EST: gi|211013176|gb|FL234118.1|FL234118
EST:     ATTTTATCATTCATCCACAGTACTGTTTTGGAAAGTGTTGTTTGGGAAAG                         GTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGAT
genomic: ATTTTATCATTCATCCACAGTACTGTTT-GGAAAGTGTTGTTTGG-AAAGgtattatgtt ... tatgaaccagGTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacttcgttcacatgattgtttcttaattctggtagttgctttattatgaaccagGTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG
                     tcttaat  putative branch site (score: 3)
                                       ctttatt  putative PPT
               attgtttcttaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atggttgacggtaaatgttaacctgcgatattctttttatcactgaacttcgttcacatgattgtttcttaattctggtagttgctttattatgaaccagGTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT