1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAATGGCCATAAGGTTGATCATAGATCCCCTCTCAGTTATGGAGTGGACTCTGTGGAAAAGTCTTTCAGTGATTTAGAGCTCAGTTCTTCAGAAATTCAGgttatctcgtagaactttgttctatgcttatttatatttgcaccatgtttggtggctggcggaataggatttctaaggaagttgctgttgttttgtggaa...
species | Zea mays |
transcript | GRMZM2G427672_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGTGGAAAAGTCTTTCAGTGATTTAGAGCTCAGTTCTTCAGAAATTCAG AAACCTGATAACGGGAATGGTGTCAGGATCAACAATTCAGATAGCGGGATTEST: gi|76288258|gb|DV027826.1|DV027826
genomic: CTGTGGAAAAGTCTTTCAGTGATTTAGAGCTCAGTTCTTCAGAAATTCAGgttatctcgt ... ttgatagcagAAACCTGATAACGGGAATGGTGTCAGGATCAACAATTCAGATAGCGGGATT
EST: CTGTGGAAAAGTCTTTCAGTGATTTAGAGCTCAGTTCTTCAGAAATTCAG AAACCTGATAACGGGAATGGTGTCAGGATCAACAATTCAGATAGCGGGATTEST: gi|88752732|gb|DY536873.1|DY536873
genomic: CTGTGGAAAAGTCTTTCAGTGATTTAGAGCTCAGTTCTTCAGAAATTCAGgttatctcgt ... ttgatagcagAAACCTGATAACGGGAATGGTGTCAGGATCAACAATTCAGATAGCGGGATT
EST: CTGTGGAAAAGTCTTTCAGTGATTTAGAGCTCAGTTCTTCAGAAATTCAG AAACCTGATAACGGGAATGGTGTCAGGATCAACAATTCAGATAGCGGGATTEST: gi|89249166|gb|DY620952.1|DY620952
genomic: CTGTGGAAAAGTCTTTCAGTGATTTAGAGCTCAGTTCTTCAGAAATTCAGgttatctcgt ... ttgatagcagAAACCTGATAACGGGAATGGTGTCAGGATCAACAATTCAGATAGCGGGATT
EST: GAAAAGTCTTTCAGTGATTTAGAGCTCAGTTCTTCAGAAATTCAG AAACCTGATAACGGGAATGGTGTCAGGATCAACAATTCAGATAGCGGGATTEST: gi|101392047|gb|EB817951.1|EB817951
genomic: GAAAAGTCTTTCAGTGATTTAGAGCTCAGTTCTTCAGAAATTCAGgttatctcgt ... ttgatagcagAAACCTGATAACGGGAATGGTGTCAGGATCAACAATTCAGATAGCGGGATT
EST: CTGTGGAAAAGTCTTTCAGTGATTTAGAGCTCAGTTCTTCAGAAATTCAG AAACCTGATAACGGGAATGGTGTCAGGATCAACAATTCAGATAGCGGGATT
genomic: CTGTGGAAAAGTCTTTCAGTGATTTAGAGCTCAGTTCTTCAGAAATTCAGgttatctcgt ... ttgatagcagAAACCTGATAACGGGAATGGTGTCAGGATCAACAATTCAGATAGCGGGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATGGCCATAAGGTTGATCATAGATCCCCTCTCAGTTATGGAGTGGACTCTGTGGAAAAGTCTTTCAGTGATTTAGAGCTCAGTTCTTCAGAAATTCAGgttatctcgtagaactttgttctatgcttatttatatttgcaccatgtttggtggctggcggaataggatttctaaggaagttgctgttgttttgtggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA