1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcgatcatatgaaactcagaaaatgcttaattaccatgaaagtttattgctgtgatttgctactcaacagtttcagttgatgtttcttattatttttcagATAACTGGAGATAGAACAGCTGTAAGGAAAGCTCTAGTTGCTTTGTCTAGCTTTCTTCAAGGTGACCTTCCAATCGGTAACTCAACAACTTATGTTAAGA
species | Zea mays |
transcript | GRMZM2G427672_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGAGGGCGCGCAGCCGCCACGGGGGCAGCCGCTTGAGGAGGTTGTCGAG ATAACTGGAGATAGAACAGCTGTAAGGAAAGCTCTAGTTGCTTTGTCTAGCEST: gi|89759040|gb|DY687989.1|DY687989
genomic: AGGAGGGCGCGCAGCCGCCACGGGGGCAGCCGCTTGAGGAGGTTGTCGAGgtatactggc ... tatttttcagATAACTGGAGATAGAACAGCTGTAAGGAAAGCTCTAGTTGCTTTGTCTAGC
EST: AGGAGGGCGCGCAGCCGCCACGGGGGCAGCCGCTTGAGGAGGTTGTCGAG ATAACTGGAGATAGAACAGCTGTAAGGAAAGCTCTAGTTGCTTTGTCTAGCEST: gi|38687521|gb|CK144552.1|CK144552
genomic: AGGAGGGCGCGCAGCCGCCACGGGGGCAGCCGCTTGAGGAGGTTGTCGAGgtatactggc ... tatttttcagATAACTGGAGATAGAACAGCTGTAAGGAAAGCTCTAGTTGCTTTGTCTAGC
EST: AGGAGGGCGCGCAGCCGCCACGGGGGCAGCCGCTTGAGGAGGTTGTCGAG ATAACTGGAGATAGAACAGCTGTAAGGAAAGCTCTAGTTGCTTTGTCTAGCEST: gi|101392049|gb|EB817952.1|EB817952
genomic: AGGAGGGCGCGCAGCCGCCACGGGGGCAGCCGCTTGAGGAGGTTGTCGAGgtatactggc ... tatttttcagATAACTGGAGATAGAACAGCTGTAAGGAAAGCTCTAGTTGCTTTGTCTAGC
EST: AGGAGGGCGCGCAGCCGCCACGGGGGCAGCCGCTTGAGGAGGTTGTCGAG ATAACTGGAGATAGAACAGCTGTAAGGAAAGCTCTAGTTGCTTTGTCTAGCEST: gi|76288259|gb|DV027827.1|DV027827
genomic: AGGAGGGCGCGCAGCCGCCACGGGGGCAGCCGCTTGAGGAGGTTGTCGAGgtatactggc ... tatttttcagATAACTGGAGATAGAACAGCTGTAAGGAAAGCTCTAGTTGCTTTGTCTAGC
EST: AGGAGGGCGCGCAGCCGCCACGGGGGCAGCCGCTTGAGGAGGTTGTCGAG ATAACTGGAGATAGAACAGCTGTAAGGAAAGCTCTAGTTGCTTTGTCTAGC
genomic: AGGAGGGCGCGCAGCCGCCACGGGGGCAGCCGCTTGAGGAGGTTGTCGAGgtatactggc ... tatttttcagATAACTGGAGATAGAACAGCTGTAAGGAAAGCTCTAGTTGCTTTGTCTAGC
attgctgtgatttgctactcaacagtttcagttgatgtttcttattatttttcagATAACTGGAGATAGAACAGCTGTAAGGAAAGCTCTAGTTGCTTTGTCTAGCTTTCTTCAAGGTGACCTTCCAATCGGTAACTCAACAACTTATGTTAAGA
agttgat putative branch site (score: 6)
tttcttattatttttc CT-rich tract
ttgatgtttcttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgatcatatgaaactcagaaaatgcttaattaccatgaaagtttattgctgtgatttgctactcaacagtttcagttgatgtttcttattatttttcagATAACTGGAGATAGAACAGCTGTAAGGAAAGCTCTAGTTGCTTTGTCTAGCTTTCTTCAAGGTGACCTTCCAATCGGTAACTCAACAACTTATGTTAAGA
- - - - - -aaactca
- - - - - - - - - - - -tgcttaa
- - - - - - - - - - - - - - - - -ccatgaa
- - - - - - - - - - - - - - - - - - - - - - -attgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctact