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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggtattagaaaggcaagtcggcaagtgcttacactgacattaagtgaaaaacagccatgtctttcattgacatctgggaactggaccttttttcagGGTTTTGTTATAGTCTCAGCTCTCCTTGTAACTGCACTGCTACAATTCGTGTATGATGGGAAGCCACCATCACTCTACTGCCTGATGGCATTACCACTTG

Basic information

species Zea mays
transcript GRMZM2G403915_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G403915_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g36390.1 (Oryza sativa), 3'ss of exon 5
gtggtattagaaaggcaagtcggcaagtgcttacactgacattaagtgaaaaacagccatgtctttcattgacatctgggaactggaccttttt------tcagGGTTTTGTTATAGTCTCAGCTCTCCTTGTAACTGCACTGCTACAATTCGTGTATGATGGGAAGCCACCATCACTCTACTGCCTGATGGCATTACCACTTG
                      |||||||| |  |||   |  || |||||| |     | || ||||||   | ||  ||||||  |  ||||      |||||||||||| ||||| ||||||||||||||||||||||| ||||||||  | | ||| || ||||| ||||||||||| |||||||| |||||||||||||
----------------------gcaagtgcctgaacttttacaaaatgaaaatc-----tctcattcatttttacctaagaactgtcctgttttgcttattcagGGTTTTGTGATAGTGTCAGCTCTCCTTGTAACTGCACTACTACAATTTATATTTGACGGAAAGCCTCCATCACTCTATTGCCTGATAGCATTACCACTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtgaaaaacagccatgtctttcattgacatctgggaactggaccttttttcagGGTTTTGTTATAGTCTCAGCTCTCCTTGTAACTGCACTGCTACAATTCGTGTATGATGGGAAGCCACCATCACTCTACTGCCTGATGGCATTACCACTTG
                       cattgac  putative branch site (score: 3)
                                            ccttttttc  putative PPT
                                              ttttttca  TA-rich tract