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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGCAAGTATCATTCAAGAATCTGGATTCCTTGACCTTTTCAATCCTTAACCAGACTAAGCTTTTGTGGACATCATTTTTCACATTTCTTATTTTGGGgtatgtccctatttgcatttcaatttcaaaaaaatactcaggttgaagaacatctgaagaagtaactaccaaaacatgcatgcaagcattatagttcgaa...

Basic information

species Zea mays
transcript GRMZM2G403915_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G403915_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g36390.1 (Oryza sativa), 5'ss of exon 3
TGCTGCAAGTATCATTCAAGAATCTGGATTCCTTGACCTTTTCAATCCTTAACCAGACTAAGCTTTTGTGGACATCATTTTTCACATTTCTTATTTTGGGgtatgtccc-----tatttgcatttcaatttcaaaaaaatactcaggttgaagaacatctgaagaagtaactaccaaaacatgcatgcaagcattatagttcgaa
| |||||  |||||| ||||||| ||||||| |||||||| ||||||||||||||||| ||||| || |  ||| |||| ||||| | ||||||||||||||||||||      ||  | |  || |  |   | ||  || | | | || | |  |||| | ||||| |  ||||  |  ||  ||    || ||   ||    
TACTGCAGATATCATACAAGAATTTGGATTCATTGACCTTCTCAATCCTTAACCAGACCAAGCTATTATTCACAGCATTCTTCACTTATCTTATTTTGGGgtatgtcctggtgatacctcctatttacatattacaatgtattgatgatgcacatgatcttatgaagttataaccatgaagtgtttgtgt-cactaatatt----