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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGGCATAATGCAGATGACATTGCAGAAACCGTCTTGCTGAACATTCTGCGTGGTGATATTGCAAGgtatatgttgcttgtaggatatgctgtttccagagttcagtgttcatacttttggttgactttttatgacgtgttgctcctgcattatag

Basic information

species Zea mays
transcript GRMZM2G402242_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G402242_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g41565.1 (Oryza sativa), 5'ss of exon 5
GTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGGCATAATGCAGATGACATTGCAGAAACCGTCTTGCTGAACATTCTGCGTGGTGATATTGCAAGgtatatgttgcttgtaggatatgctgtttccagagttcagtgttcatacttttggttgactttttatgacgtgttgctcctgcattatag
||||||||||| | |||| ||| |||||||| ||||| |||||||| ||||||||||||||||| || ||  |||| ||  | ||||||||||||||| |||   || || |  |    |    |||        ||| ||| |     ||  || ||| ||| | | |  | | |              
GTGCTGCTCTCTTAAAAGTTGACAAGATTGTGACTGGACATAATGCTGATGACATTGCAGAAACTGTGTTATTGAATATATTACGTGGTGATATTGCACGgttagtgctgatcat----tcctttgtccttttttttctgtggttgatgttaaggctgattttcttt-atatatag--------------

upper sequence: GRMZM2G402242_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g52470.2 (Oryza sativa), 5'ss of exon 6
GTGCTGCTCTCCTGAAAGCTGATAAGATTGTAACTGGGCATAATGCAGATGACATTGCAGAAACCGTCTTGCTGAACATTCTGCGTGGTGATATTGCAAGgtatatgttgcttgtaggatatgctgtttccagagttcagtgttcatacttttggttgactttttatgacgtgttgctcctgcattatag
||||||||||| | |||| ||| |||||||| ||||| |||||||| ||||||||||||||||| || ||  |||| ||  | ||||||||||||||| |||   || || |  |    | ||   |||     | |   || |  || |  || ||  |||| |||   |                   
GTGCTGCTCTCTTAAAAGTTGACAAGATTGTGACTGGACATAATGCTGATGACATTGCAGAAACTGTGTTATTGAATATATTACGTGGTGATATTGCACGgttagtgctgatcattcctt-tgtcctttttttgggtggttgatgttaatgctgattttctttatatatag-------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91872707|gb|EB402664.1|EB402664
EST:     GACATTGCAGAAACCGTCTTGCTGAACATTCTGCGTGGTGATATTGCAAG                         GTTAAGTAGATGTACCTTTATAACTACTGGTGAAGATGGGCCAATACCAAG
genomic: GACATTGCAGAAACCGTCTTGCTGAACATTCTGCGTGGTGATATTGCAAGgtatatgttg ... tgcattatagGTTAAGTAGATGTACCTTTATAACTACTGGTGAAGATGGGCCAATACCAAG
EST: gi|87157289|gb|DY402078.1|DY402078
EST:     GACATTGCAGAAACCGTCTTGCTGAACATTCTGCGTGGTGATATTGCAAG                         GTTAAGTAGATGTACCTTTATAACTACTGGTG
genomic: GACATTGCAGAAACCGTCTTGCTGAACATTCTGCGTGGTGATATTGCAAGgtatatgttg ... tgcattatagGTTAAGTAGATGTACCTTTATAACTACTGGTG