1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCACAACTATGGTCTTGATTTGTTCCTTTTATCTGTCGATGAAGGAATCACAGGATATAGAGATGACTCACTAGAAACTGTTAAAAGGAATGAAATACAGgtctcccggtcacagacacacttgctcagttttctggaagctctgactttaaatattttagtgtgtggtatttggattcagtgagtttcactattccctgctgcag
species | Zea mays |
transcript | GRMZM2G402242_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAGGATATAGAGATGACTCACTAGAAACTGTTAAAAGGAATGAAATACAG TACGGCCTGCCACTGAAGATTGTTTCCTATAAAGATTTGTATGGCTGGACAEST: gi|37419554|gb|CF647460.1|CF647460
genomic: CAGGATATAGAGATGACTCACTAGAAACTGTTAAAAGGAATGAAATACAGgtctcccggt ... cctgctgcagTACGGCCTGCCACTGAAGATTGTTTCCTATAAAGATTTGTATGGCTGGACA
EST: CAGGATATAGAGATGACTCACTAGAAACTGTTAAAAGGAATGAAATACAG TACGGCCTGCCACTGAAGATTGTTTCCTATAAAGATEST: gi|37416521|gb|CF645910.1|CF645910
genomic: CAGGATATAGAGATGACTCACTAGAAACTGTTAAAAGGAATGAAATACAGgtctcccggt ... cctgctgcagTACGGCCTGCCACTGAAGATTGTTTCCTATAAAGAT
EST: CAGGATATAGAGATGACTCACTAGAAACTGTTAAAAGGAATGAAATACAG TACGGCCTGCCACTGAAGATTGTTTCCTATAAAGATTTGTATGGCTGGACAEST: gi|91872707|gb|EB402664.1|EB402664
genomic: CAGGATATAGAGATGACTCACTAGAAACTGTTAAAAGGAATGAAATACAGgtctcccggt ... cctgctgcagTACGGCCTGCCACTGAAGATTGTTTCCTATAAAGATTTGTATGGCTGGACA
EST: CAGGATATAGAGATGACTCACTAGAAACTGTTAAAAGGAATGAAATACAG TACGGCCTGCCACTGAAGATTGTTTCCTATAAAGATTTGTATGGCTGGACAEST: gi|26558362|gb|CA830597.1|CA830597
genomic: CAGGATATAGAGATGACTCACTAGAAACTGTTAAAAGGAATGAAATACAGgtctcccggt ... cctgctgcagTACGGCCTGCCACTGAAGATTGTTTCCTATAAAGATTTGTATGGCTGGACA
EST: CAGGATATAGAGATGACTCACTAGAAACTGTTAAAAGGAATGAAATACAG TACGGTCTGCCACTGAAGATTGTTTCCTATAAAGATTTGTATGGCTGGACAEST: gi|87157289|gb|DY402078.1|DY402078
genomic: CAGGATATAGAGATGACTCACTAGAAACTGTTAAAAGGAATGAAATACAGgtctcccggt ... cctgctgcagTACGGCCTGCCACTGAAGATTGTTTCCTATAAAGATTTGTATGGCTGGACA
EST: CAGGATATAGAGATGACTCACTAGAAACTGTTAAAAGGAATGAAATACAG TACGGTCTGCCACTGAAGATTGTTTCCTATAAAGATTTGTATGGCTGGACAEST: gi|22472216|gb|BU036696.1|BU036696
genomic: CAGGATATAGAGATGACTCACTAGAAACTGTTAAAAGGAATGAAATACAGgtctcccggt ... cctgctgcagTACGGCCTGCCACTGAAGATTGTTTCCTATAAAGATTTGTATGGCTGGACA
EST: CAGGATATAGAGATGACTCACTAGAAACTGTTAAAAGGAATGAAATACAG TACGGTCTGCCACTGAAGATTGTTTCCTATAAAGATTTGTATGGCTGGACAEST: gi|91877955|gb|EB407912.1|EB407912
genomic: CAGGATATAGAGATGACTCACTAGAAACTGTTAAAAGGAATGAAATACAGgtctcccggt ... cctgctgcagTACGGCCTGCCACTGAAGATTGTTTCCTATAAAGATTTGTATGGCTGGACA
EST: CAGGATATAGAGATGACTCACTAGAAACTGTTAAAAGGAATGAAATACAG TACGGCCTGCCACTGAAGATTGTTTCCTATAAAGATTTGTATGGCTGGACAEST: gi|50337086|gb|CO532212.1|CO532212
genomic: CAGGATATAGAGATGACTCACTAGAAACTGTTAAAAGGAATGAAATACAGgtctcccggt ... cctgctgcagTACGGCCTGCCACTGAAGATTGTTTCCTATAAAGATTTGTATGGCTGGACA
EST: CAGGATATAGAGATGACTCACTAGAAACTGTTAAAAGGAATGAAATACAG TACGGCCTGCCACTGAAGATTGTTTCCTATAAAGATTTGTATGGCTGGACA
genomic: CAGGATATAGAGATGACTCACTAGAAACTGTTAAAAGGAATGAAATACAGgtctcccggt ... cctgctgcagTACGGCCTGCCACTGAAGATTGTTTCCTATAAAGATTTGTATGGCTGGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACAACTATGGTCTTGATTTGTTCCTTTTATCTGTCGATGAAGGAATCACAGGATATAGAGATGACTCACTAGAAACTGTTAAAAGGAATGAAATACAGgtctcccggtcacagacacacttgctcagttttctggaagctctgactttaaatattttagtgtgtggtatttggattcagtgagtttcactattccctgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA