1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatctgttctctatcaagtttctttgtattcttgtattttcaccctcaacttaccctctcaccttcatgtttctcttccagGTTATCAGACTTCCTTGGTAGGATGGATCTTTAGGGACCAGCAGCTGTATTGATATCAAAT
species | Zea mays |
transcript | GRMZM2G395842_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAAGTACGGTAATTGCAAAAAGTATCAG GTTATCAGACTTCCTTGGTAGGATGGATCTTTAGGGACCAGCAGCGGTATTEST: gi|67020621|gb|CO449370.1|CO449370
genomic: GAAGTACAGTAATTGCAAAAAGTATCAGgtatctgttc ... tctcttccagGTTATCAGACTTCCTTGGTAGGATGGATCTTTAGGGACCAGCAGCTGTATT
EST: CGGCATCTTGATGCTGATGATGGAAGTACAGTAATTGCAAAAAGTATCAG GTTATCAGACTTCCTTGGTAGGATGGATCTTTAGGGACCAGCAGCTGTATT
genomic: CGGCATCTTGATGCTGATGATGGAAGTACAGTAATTGCAAAAAGTATCAGgtatctgttc ... tctcttccagGTTATCAGACTTCCTTGGTAGGATGGATCTTTAGGGACCAGCAGCTGTATT
tattcttgtattttcaccctcaacttaccctctcaccttcatgtttctcttccagGTTATCAGACTTCCTTGGTAGGATGGATCTTTAGGGACCAGCAGCTGTATTGATATCAAAT
cttaccctctcacctt CT-rich tract
ttgtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctgttctctatcaagtttctttgtattcttgtattttcaccctcaacttaccctctcaccttcatgtttctcttccagGTTATCAGACTTCCTTGGTAGGATGGATCTTTAGGGACCAGCAGCTGTATTGATATCAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG