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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGTGCTTGTTCCAAGCCTAACCCTGGTCAGTTTTGGCGATTGATTGGCCGCAGGATCGTCATCGACAACGAGTCCTCGGCGGAGGCCACAATTGTAAGGgtatgttccttgctccggttaatttgctgaactgaatttaatttccgctgtcgattttgggaatttaccattctgctgttttctccatggtattgcattatgatttgtag

Basic information

species Zea mays
transcript GRMZM2G383408_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22489287|gb|BU049210.1|BU049210
EST:     CGAGTCCTCGGCGGAGGCCACAATTGTAAGG                         GTAGATAGCGCGAATGAATACGGGATATTGCTGGAAGTGATCCAGGTCATG
genomic: CGAGTCCTCGGCGGAGGCCACAATTGTAAGGgtatgttcct ... tgatttgtagGTAGATAGCGCGAATGAATACGGGATATTGCTGGAAGTGATCCAGGTCATG
EST: gi|89106281|gb|DY576498.1|DY576498
EST:     CGAGTCCTCGGCGGAGGCCACAATTGTAAGG                         GTAGATAGCGCGAATGAATACGGGATATTGCTGGAAGTGATCCAGGTCATG
genomic: CGAGTCCTCGGCGGAGGCCACAATTGTAAGGgtatgttcct ... tgatttgtagGTAGATAGCGCGAATGAATACGGGATATTGCTGGAAGTGATCCAGGTCATG
EST: gi|18053160|gb|BM318818.1|BM318818
EST:     CGAGTCCTCGGCGGAGGCCACAATTGTAAGG                         GTAGATAGCGCGAATGAATACGGGATATTGCTGGAAGTGATCCAGGTCATG
genomic: CGAGTCCTCGGCGGAGGCCACAATTGTAAGGgtatgttcct ... tgatttgtagGTAGATAGCGCGAATGAATACGGGATATTGCTGGAAGTGATCCAGGTCATG
EST: gi|211443950|gb|FL410270.1|FL410270
EST:     GCAGGATCGTCATCGACAACGAGTCCTCGGCGGAGGCCACAATTGTAAGG                         GTAGATAGCGCGAATGAATACGGGATATTGCTGGAAGTG
genomic: GCAGGATCGTCATCGACAACGAGTCCTCGGCGGAGGCCACAATTGTAAGGgtatgttcct ... tgatttgtagGTAGATAGCGCGAATGAATACGGGATATTGCTGGAAGTG
EST: gi|50330819|gb|CO525945.1|CO525945
EST:     GCAGGATCGTCATCGACAACGAGTCCTCGGCGGAGGCCACAATTGTAAGG                         GTAGATAGCGCGAATGAATACGGGATATTGCTGGAAGTGATCCAGGTCATG
genomic: GCAGGATCGTCATCGACAACGAGTCCTCGGCGGAGGCCACAATTGTAAGGgtatgttcct ... tgatttgtagGTAGATAGCGCGAATGAATACGGGATATTGCTGGAAGTGATCCAGGTCATG