1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttttttttttgtttttcatctctgtttcttgctgtatttacgccgtaccatggcgctgatgaattggtttccatgtgattgtgccggctgtgggcgcagACGAAGGCTACGGGCCTACTTGGGACAGCGACGACGAATACGACAACTTCATACGCAAGATGAACCCGCCAAGGTGCGCTCTCAATTATGCATCATCACA
species | Zea mays |
transcript | GRMZM2G383408_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGCCTGCTGCCGACTTCGCGGCCTCGTCGCCCTGCCATGTCCACCATGG ACGAAGGCTACGGGCCTACTTGGGACAGCGACGACGAATACGACAACTTCA
genomic: TCGCCTGCTGCCGACTTCGCGGCCTCGTCGCCCTGCCATGTCCACCATGGgtacctctct ... gtgggcgcagACGAAGGCTACGGGCCTACTTGGGACAGCGACGACGAATACGACAACTTCA
gtaccatggcgctgatgaattggtttccatgtgattgtgccggctgtgggcgcagACGAAGGCTACGGGCCTACTTGGGACAGCGACGACGAATACGACAACTTCATACGCAAGATGAACCCGCCAAGGTGCGCTCTCAATTATGCATCATCACA
cgctgat putative branch site (score: 4)
atgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttttttttgtttttcatctctgtttcttgctgtatttacgccgtaccatggcgctgatgaattggtttccatgtgattgtgccggctgtgggcgcagACGAAGGCTACGGGCCTACTTGGGACAGCGACGACGAATACGACAACTTCATACGCAAGATGAACCCGCCAAGGTGCGCTCTCAATTATGCATCATCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - tgttttt
- - - - - - - - - - -tctgttt
- - - - - - - - - - - - - - cttgctg
- - - - - - - - - - - - - - - - - - - - - - - - ccatggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgccggc