1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgaccatatcaaccaattgtgcctcctgaattatagcatgtcctcctaacctaacattgactagtgttcttggaacatcgtagTCCTTGGGCGCAGATTCAAGATACATTCCTTCCCGCCGGAGATCGGTAGACGTCGCCGCCGCAGCTGACCACAACATCATCGAACTGACAGGGACAGACA
species | Zea mays |
transcript | GRMZM2G383408_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGATCAAAGATGAGGCAACCCTCACACAGATCGAAGACTACATCAGAAAG TCCTTGGGCGCAGATTCAAGATACATTCCTTCCEST: gi|22489287|gb|BU049210.1|BU049210
genomic: AGATCAAAGATGAGGCAACCCTCACACAGATCGAAGACTACATCAGAAAGgtatgaccat ... aacatcgtagTCCTTGGGCGCAGATTCAAGATACATTCCTTCC
EST: AGATCAAAGATGAGGCAACCCTCACACAGATCGAAGACTACATCAGAAAG TCCTTGAGCGCEST: gi|148947740|gb|EC893223.2|EC893223
genomic: AGATCAAAGATGAGGCAACCCTCACACAGATCGAAGACTACATCAGAAAGgtatgaccat ... aacatcgtagTCCTTGGGCGC
EST: AGATCAAAGATGAGGCAACCCTCACACAGATCGAAGACTACATCAGAAAG TCCTTGGGCGCAGATTCAAGATACATTCCTTCCCGCCGGAGATCGGTAGACEST: gi|18384701|gb|BM417900.1|BM417900
genomic: AGATCAAAGATGAGGCAACCCTCACACAGATCGAAGACTACATCAGAAAGgtatgaccat ... aacatcgtagTCCTTGGGCGCAGATTCAAGATACATTCCTTCCCGCCGGAGATCGGTAGAC
EST: AGATCAAAGATGAGGCAACCCTCACACAGATCGAAGACTACATCAGAAAG TCCTTGAGCGCEST: gi|8367862|gb|BE050807.1|BE050807
genomic: AGATCAAAGATGAGGCAACCCTCACACAGATCGAAGACTACATCAGAAAGgtatgaccat ... aacatcgtagTCCTTGGGCGC
EST: AGATCAAAGATGAGGCAACCCTCACACAGATCGAAGATT-CATCAGAAAG TCCT-GGGCGCAGATTCAAGA-ACATTCCTTCCCGCCGGAGATCGGTAGACEST: gi|149074060|gb|EE162401.2|EE162401
genomic: AGATCAAAGATGAGGCAACCCTCACACAGATCGAAGACTACATCAGAAAGgtatgaccat ... aacatcgtagTCCTTGGGCGCAGATTCAAGATACATTCCTTCCCGCCGGAGATCGGTAGAC
EST: AGATCAAAGATGAGGCAACCCTCACACAGATCGAAGACTACATCAGAAAG TCCTTGGGCGCAGATTCAAGATACATTCCTTCCCGCCGGAGATCGGTAGAC
genomic: AGATCAAAGATGAGGCAACCCTCACACAGATCGAAGACTACATCAGAAAGgtatgaccat ... aacatcgtagTCCTTGGGCGCAGATTCAAGATACATTCCTTCCCGCCGGAGATCGGTAGAC
aattatagcatgtcctcctaacctaacattgactagtgttcttggaacatcgtagTCCTTGGGCGCAGATTCAAGATACATTCCTTCCCGCCGGAGATCGGTAGACGTCGCCGCCGCAGCTGACCACAACATCATCGAACTGACAGGGACAGACA
taacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaccatatcaaccaattgtgcctcctgaattatagcatgtcctcctaacctaacattgactagtgttcttggaacatcgtagTCCTTGGGCGCAGATTCAAGATACATTCCTTCCCGCCGGAGATCGGTAGACGTCGCCGCCGCAGCTGACCACAACATCATCGAACTGACAGGGACAGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA