1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttttttttttgtttttcatctctgtttcttgctgtatttacgccgtaccatggcgctgatgaattggtttccatgtgattgtgccggctgtgggcgcagACGAAGGCTACGGGCCTACTTGGGACAGCGACGACGAATACGACAACTTCATACGCAAGATGAACCCGCCAAG
species | Zea mays |
transcript | GRMZM2G383408_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGCCTGCTGCCGACTTCGCGGCCTCGTCGCCCTGCCATGTCCACCATGG ACGAAGGCTACGGGCCTACTTGGGACAGCGACGACGAATACGACAACTTCAEST: gi|148947740|gb|EC893223.2|EC893223
genomic: TCGCCTGCTGCCGACTTCGCGGCCTCGTCGCCCTGCCATGTCCACCATGGgtacctctct ... gtgggcgcagACGAAGGCTACGGGCCTACTTGGGACAGCGACGACGAATACGACAACTTCA
EST: TCGCCTGCTGCCGACTTCGCGGCCTCGTCGCCCTGCCATGTCCACCATGG ACGAAGGCTACGGGCCTACTTGGGACAGCGACGACGAATACGACAACTTCAEST: gi|91870307|gb|EB400808.1|EB400808
genomic: TCGCCTGCTGCCGACTTCGCGGCCTCGTCGCCCTGCCATGTCCACCATGGgtacctctct ... gtgggcgcagACGAAGGCTACGGGCCTACTTGGGACAGCGACGACGAATACGACAACTTCA
EST: TCGCCTGCTGCCGACTTCGCGGCCTCGTCGCCCTGCCATGTCCACCATGG ACGAAGGCTACGGGCCTACTTGGGACAGCGACGACGAATACGACAACTTCAEST: gi|8367862|gb|BE050807.1|BE050807
genomic: TCGCCTGCTGCCGACTTCGCGGCCTCGTCGCCCTGCCATGTCCACCATGGgtacctctct ... gtgggcgcagACGAAGGCTACGGGCCTACTTGGGACAGCGACGACGAATACGACAACTTCA
EST: TCGCCTGCTGCCGACTTCGCGGCCTCGTCGCCCTGCCATGTCCACCATGG ACGAAGGCTACGGGCCTACTTGGGACAGTGACGACGAATACGACAACTTCA
genomic: TCGCCTGCTGCCGACTTCGCGGCCTCGTCGCCCTGCCATGTCCACCATGGgtacctctct ... gtgggcgcagACGAAGGCTACGGGCCTACTTGGGACAGCGACGACGAATACGACAACTTCA
gtaccatggcgctgatgaattggtttccatgtgattgtgccggctgtgggcgcagACGAAGGCTACGGGCCTACTTGGGACAGCGACGACGAATACGACAACTTCATACGCAAGATGAACCCGCCAAG
cgctgat putative branch site (score: 94)
atgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttttttttgtttttcatctctgtttcttgctgtatttacgccgtaccatggcgctgatgaattggtttccatgtgattgtgccggctgtgggcgcagACGAAGGCTACGGGCCTACTTGGGACAGCGACGACGAATACGACAACTTCATACGCAAGATGAACCCGCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG