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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttcttttcacctcgcttcacataatttgaataacaagaaaatgctctcatttttttcctatgttgcctcattttataggtttaattcgatatggaggggaaagtgtgtggtgtcacatctgaaggtgaaactgcaaagtgcaagaaggtggtgtgtgatcctttcagGATCTGAGTCTTCTGCTTCTAACTTCTGAGAGAGATCCAGGGATCATACCTCGCAATGCACATCCTCCAGAACCCGAAGGGTTTGATGGCAATGCAGAGG

Basic information

species Zea mays
transcript GRMZM2G375085_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G375085_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os05g23860.1 (Oryza sativa), 3'ss of exon 8
----gtcttcttttcacctcgct-tcacataa---tttgaataacaagaaaatgctctcat-ttttttcctatgttgcctcattttataggtttaattcgatatggaggggaaagtgtgtggtgtcacatctgaaggtgaaactgcaaagtgcaagaaggtggtgtgtgatcctttcagGATCTGAGTCTTCTGCTTCTAACTTCTGAGAGAGATCCAGGGATCATACCTCGCAATGCACATCCTCCAGAACCCGAAGGGTTTGATGGCAATGCAGAGG
    |  | |  |  |||  |   | || |     | || || || ||| ||     | |   |||||   |||          |  |||||| |||| |||||||| |||||||| ||||| || || || ||||||||||||||||| |||||||| || || ||||||||||     ||      ||                                                                                         
gtgtgattaccatcaaccctgtcattacttgcatctctggatgaccagacaacctaataaaactttttggcatgccatacatgatcttagGTTGAATTTGATATGGAAGGGAAAGTCTGTGGCGTTACTTCAGAAGGTGAAACTGCAAAATGCAAGAAAGTTGTTTGTGATCCTTC----ATACTTACCTAACA-------------------------------------------------------------------------------------

upper sequence: GRMZM2G375085_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os05g34540.1 (Oryza sativa), 3'ss of exon 8
gtcttcttttcacctcgcttcacataatttgaataa-caagaaaatgctctcatttttttcctatgttgcctcattttataggtttaattcgatatggaggggaaagtgtgtggtgtcacatctgaaggtgaaactgcaaagtgcaagaaggtggtgtgtgatcctttcagGATCTGAGTCTTCTGCTTCTAACTTCTGAGAGAGATCCAGGGATCATACCTCGCAATGCACATCCTCCAGAACCCGAAGGGTTTGATGGCAATGCAGAGG
||    || ||| |   |    ||| | ||| || | |  |   |    |  ||    || || | | || |   ||| |||||| |||| |||||||| |||||||| || || || ||||| ||||| ||||||||||| |||||||| || || ||||| |||| |    |      |                                                                                          
gtgcgattatcatcaacccaatcatgacttgcatcatctgggtgacaaccaaataaaatttcttt-tggcatgtctttttagGTTGAATTTGATATGGAAGGGAAAGTCTGCGGCGTTACATCAGAAGGAGAAACTGCAAAATGCAAGAAAGTTGTTTGTGACCCTTCCTACTTACCCAACA-----------------------------------------------------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacatctgaaggtgaaactgcaaagtgcaagaaggtggtgtgtgatcctttcagGATCTGAGTCTTCTGCTTCTAACTTCTGAGAGAGATCCAGGGATCATACCTCGCAATGCACATCCTCCAGAACCCGAAGGGTTTGATGGCAATGCAGAGG
                                              tcctttc  CT-rich tract