Sequence
atgc intronic sequence ATGC exonic sequencegtaagtcttggccaaagctgctccctagctgttgctatggataaacttgtgtggttcctaatgcttggaatatatttcctttatatagtgcagttatatttacctattgtgtgcctttagCTATATGCAGACTCTCTTGCACGCTTTCAAGGAGGATCACCTTATATCTATCCACTATATGGGCTGGGTGAGCTACCACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G375085_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g23860.1 (Oryza sativa), 3'ss of exon 6
gtaagtcttggccaaagctgctccctagctgttgctatggataaacttgtgtggttcctaatgcttggaatatatttcctttatatagtgcagttatattt--acctattgtgtgcctttagCTATATGCAGACTCTCTTGCACGCTTTCAAGGAGGATCACCTTATATCTATCCACTATATGGGCTGGGTGAGCTACCACAG
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gtaagtattgatcaaagctcctgtagattgttcgtagtcttctgctacggatatcctgctgttctctgaatattcatgctttatgaagttcaattacattttagtgctttatctacttgtagCTATATGCAGAGTCCCTTGCACGTTTTCAAGGAGGCTCACCTTATATTTATCCACTCTATGGGCTGGGTGAGCTGCCACAG
upper sequence: GRMZM2G375085_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g34540.1 (Oryza sativa), 3'ss of exon 6
gtaagtcttggccaaagctgctccctagctgttgctatggataaacttgtgtggttcctaatgcttggaatatatttcctttatatagtgcagttatatttacctattgt-----gtgcctttagCTATATGCAGACTCTCTTGCACGCTTTCAAGGAGGATCACCTTATATCTATCCACTATATGGGCTGGGTGAGCTACCACAG
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------------------------cttactagtgttcctcttttagctgtgtcactgctgttttgtg-aatattctttctttatggagttcagttacatttattggttatcttctgttcttgtagTTATATGCAGAGTCCCTTGCACGCTTTCAAGGAGGTTCACCTTATATTTATCCACTGTACGGTCTGGGTGAGCTGCCACAG
upper sequence: GRMZM2G375085_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S20_16V6.1 (Physcomitrella patens), 3'ss of exon 6
-------gtaagtcttggccaaagctgctccc----tagctgttgctatg-gataaacttgtgtggttcctaatgcttggaatatatttcc---tttatatagtgcagttatatttacctattgtgtgcc--tttagCTATATGCAGACTCTCTTGCACGCTTTCAAGGAGGATCACCTTATATCTATCCACTATATGGGCTGGGTGAGCTACCACAG
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gtatgcctttatttcctgctaacacactccctgttatagctcattctgtttaatccacacgttatcttcacaagatttttatcagctctacagttttgttcgctacaacctgagttgtcttttttttcttggtgcagTTGTACGCAGAGTCAATGGCCCGGTTTCAAGGAGGATCACCTTACATCTATCCACTCTACGGCCTCGGCGAGTTGCCACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggaatatatttcctttatatagtgcagttatatttacctattgtgtgcctttagCTATATGCAGACTCTCTTGCACGCTTTCAAGGAGGATCACCTTATATCTATCCACTATATGGGCTGGGTGAGCTACCACAG
tgccttt CT-rich tract
tatatttcctttatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtcttggccaaagctgctccctagctgttgctatggataaacttgtgtggttcctaatgcttggaatatatttcctttatatagtgcagttatatttacctattgtgtgcctttagCTATATGCAGACTCTCTTGCACGCTTTCAAGGAGGATCACCTTATATCTATCCACTATATGGGCTGGGTGAGCTACCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT