Sequence
atgc intronic sequence ATGC exonic sequenceCCAGAGTACATATGAGGATGTTGCCCGTGACACAAACAGAGGACACACAGTGGCTGCTGTTGCTGATTGCTTCTGTTTGGCAAAAGATGCTGGGTTTAAGgtttttttttgtcacctagctttgcttaattgattttattatttgtttatgattgttctgactatcttgattcacccttttgacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G359735_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os04g40840.1 (Oryza sativa), 5'ss of exon 4
CCAGAGTACATATGAGGATGTTGCCCGTGACACAAACAGAGGACACACAGTGGCTGCTGTTGCTGATTGCTTCTGTTTGGCAAAAGATGCTGGGTTTAAGgttttttttt----------gtcacctagctttgcttaattgatttt---attatttgtt---------tatgat------tgttctgactatcttgattcacc---------cttttgacag
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TCAGAGCACATACGAGGATGTTGCACGTGACACAAACAGAGGTCACACTGTAGCTGCTGTTGCTGATTGCTTTTGTTTGGCTAAAGATGCTGGTTTTAAGgtagtctccttaaatcattaatcatctcgtttagtcaacttgttgctggcagcatttgttaaaataaagtatcatctcatatggttgaactgttttaatcctccattgattaccttttgatag
upper sequence: GRMZM2G359735_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA04G36790.1 (Glycine max), 5'ss of exon 4
CCAGAGTACATATGAGGATGTTGCCCGTGACACAAACAGAGGACACACAGTGGCTGCTGTTGCTGATTGCTTCTGTTTGGCAAAAGATGCTGGGTTTAAGgtttttttttgtcacctagctttgc----ttaattgattttattatttgtttatgattgttctgactatcttgattcacccttttgacag------------
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CCAAAGCACCTATGAGGACGTTGCTCGAGACACAAATAGAGGACACACTGTTGCTGCTGTAGCGGATTGTTTTTGCCTGGCTAAAGATGCTGGTTTCAAGgttttttactcttatctcaatctgcacactcagtagaaaacataactttttcctgaccaacc--attatcctgtgtgtccctcatgctgcatctttttagat
upper sequence: GRMZM2G359735_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA06G18150.1 (Glycine max), 5'ss of exon 4
CCAGAGTACATATGAGGATGTTGCCCGTGACACAAACAGAGGACACACAGTGGCTGCTGTTGCTGATTGCTTCTGTTTGGCAAAAGATGCTGGGTTTAAGgtttttttttgtca-cctagctttgc----ttaattgattttattatttgtttatgattgttctgactatcttgattcacccttttgacag-----------
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CCAAAGCACCTATGAAGATGTTGCTCGAGACACAAATAGAGGACACACTGTTGCTGCTGTAGCTGATTGTTTTTGCCTGGCTAAAGATGCTGGTTTCAAGgttttttactcttaatctcaatctgcacactcagtagaaaacagaactttgtcctgatcaacc--attatcctatgtgtccctcctgctgcattttttggat
upper sequence: GRMZM2G359735_T03 (Zea mays), 5'ss of exon 4
lower sequence: AT5G50320.1 (Arabidopsis thaliana), 5'ss of exon 4
CCAGAGTACATATGAGGATGTTGCCCGTGACACAAACAGAGGACACACAGTGGCTGCTGTTGCTGATTGCTTCTGTTTGGCAAAAGATGCTGGGTTTAAGgtttttttttgtcacctagctttgcttaattgattttattatttgtttatgattgttctgactatcttga-----ttcacccttttgacag------------------------------------------------------------------------------------------------
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CCAGAGCACATATGAAGATGTTGCCCGTGACACAAATAGAGGTCATACTGTTGCTGCTGTAGCTGACTGCTTCTGCTTGGCTAAAGATGCTGGTTTCAAGgtattcccttatagattagtctt-tataaatatttttagttttctcatgttagtatcaagtttatcttggcagctttcacctcctatgtttctgttcattaatatccttgaaaccaatgaacatttctttattttagagacactgctaaatttgtatccttacctccgtttttcattttgcctatag
upper sequence: GRMZM2G359735_T03 (Zea mays), 5'ss of exon 4
lower sequence: Vv17s0000g10190.t01 (Vitis vinifera), 5'ss of exon 4
CCAGAGTACATATGAGGATGTTGCCCGTGACACAAACAGAGGACACACAGTGGCTGCTGTTGCTGATTGCTTCTGTTTGGCAAAAGATGCTGGGTTTAAGgtt-----tttttttgtcacctagctttgcttaattgatttt---attatttgtttatgattgttctg--actatcttgatt---caccc--ttttgacag
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TCAAAGCACCTACGAGGATGTTGCCCGTGACACTAATAGAGGACATACAGTAGCTGCTGTGGCTGATTGTTTTTGCTTGGCCAAGGATGCTGGTTTCAAGgttagatgctaatccattatgaaaatacacttgccttttgttggaactcttgatttgaacttctttcagcaccatttggtttttgcaactagttttctca-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|149056996|gb|EE156553.2|EE156553EST: TGGCTGCTGTTGCTGATTGCTTCTGTTTGGCAAAAGATGCTGGGTTTAAG GTGGTTGCCCACATGATGCCAGATTTACCTAATGTTGGAGTTGA
genomic: TGGCTGCTGTTGCTGATTGCTTCTGTTTGGCAAAAGATGCTGGGTTTAAGgttttttttt ... cttttgacagGTGGTTGCCCACATGATGCCAGATTTACCTAATGTTGGAGTTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCAGAGTACATATGAGGATGTTGCCCGTGACACAAACAGAGGACACACAGTGGCTGCTGTTGCTGATTGCTTCTGTTTGGCAAAAGATGCTGGGTTTAAGgtttttttttgtcacctagctttgcttaattgattttattatttgtttatgattgttctgactatcttgattcacccttttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG