Sequence
atgc intronic sequence ATGC exonic sequencegtttttttttgtcacctagctttgcttaattgattttattatttgtttatgattgttctgactatcttgattcacccttttgacagGTGGTTGCCCACATGATGCCAGATTTACCTAATGTTGGAGTTGAAAGAGATTTGGAAAGTTTCAGAGAATTTTTTGGAAGTCCAGCGTTCCGGGCTGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G359735_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os04g40840.1 (Oryza sativa), 3'ss of exon 4
---------------------------------gttttttt-ttgtcacctagctttgcttaattga----ttttattatttgtttatgattgttctgactatc--ttgattcacccttttgacagGTGGTTGCCCACATGATGCCAGATTTACCTAATGTTGGAGTTGAAAGAGATTTGGAAAGTTTCAGAGAATTTTTTGGAAGTCCAGCGTTCCGGGCTGATG
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gtagtctccttaaatcattaatcatctcgtttagtcaacttgttgctggcagcatttgttaaaataaagtatcatctcatatggttg-aactgttttaatcctccattgatta--ccttttgatagGTGGTCGCCCACATGATGCCAGATTTACCTAATGTTGGAGTTGAAAGAGATCTGGAAAGTTTCCGAGAATTTTTTGAAAATCCAGCATTCCGAGCTGATG
upper sequence: GRMZM2G359735_T03 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA04G36790.1 (Glycine max), 3'ss of exon 4
-------------gtttttttttgtcacctagctttgcttaattgattttattatttgttt-atgattgttctgactatcttgattcacccttttgacagGTGGTTGCCCACATGATGCCAGATTTACCTAATGTTGGAGTTGAAAGAGATTTGGAAAGTTTCAGAGAATTTTTTGGAAGTCCAGCGTTCCGGGCTGATG
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gaatatggactaggttagtacgtctcatcttatgaatgttatcccactttctctttcttctcatgtagtttttgcttaatttttttggcttttgctttagGTTGTTGCTCACATGATGCCTGACCTTCCTAATGTTGGTGTTGAAAGGGACATGGAAAGTTTCCGGGAGTTTTTTGAGAGCCCCATGTTTAGAGCAGATG
upper sequence: GRMZM2G359735_T03 (Zea mays), 3'ss of exon 4
lower sequence: AT5G50320.1 (Arabidopsis thaliana), 3'ss of exon 4
--------------------------------------------------------------------------------------gtttttttttgtcacctagctttgc--ttaattgattttattatttgtttatgattgttctga----------ctatcttgattcacccttttg---acagGTGGTTGCCCACATGATGCCAGATTTACCTAATGTTGGAGTTGAAAGAGATTTGGAAAGTTTCAGAGAATTTTTTGGAAGTCCAGCGTTCCGGGCTGATG
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gtattcccttatagattagtctttataaatatttttagttttctcatgttagtatcaagtttatcttggcagctttcacctcctatgtttctgttcattaa-tatccttgaaaccaatgaacatttctttattttagagacactgctaaatttgtatccttacctccgtttttcattttgcctatagGTGGTTGCACATATGATGCCTGATCTTCCTAATGTTGGGGTTGAGAGAGACATGGAAAGTTTCAAGGAGTTTTTCGAGAGCCCATCTTTTAGAGCAGATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|149056996|gb|EE156553.2|EE156553EST: TGGCTGCTGTTGCTGATTGCTTCTGTTTGGCAAAAGATGCTGGGTTTAAG GTGGTTGCCCACATGATGCCAGATTTACCTAATGTTGGAGTTGA
genomic: TGGCTGCTGTTGCTGATTGCTTCTGTTTGGCAAAAGATGCTGGGTTTAAGgttttttttt ... cttttgacagGTGGTTGCCCACATGATGCCAGATTTACCTAATGTTGGAGTTGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gattttattatttgtttatgattgttctgactatcttgattcacccttttgacagGTGGTTGCCCACATGATGCCAGATTTACCTAATGTTGGAGTTGAAAGAGATTTGGAAAGTTTCAGAGAATTTTTTGGAAGTCCAGCGTTCCGGGCTGATG
ttcaccctttt CT-rich tract
tattatttgtttatga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttttttttgtcacctagctttgcttaattgattttattatttgtttatgattgttctgactatcttgattcacccttttgacagGTGGTTGCCCACATGATGCCAGATTTACCTAATGTTGGAGTTGAAAGAGATTTGGAAAGTTTCAGAGAATTTTTTGGAAGTCCAGCGTTCCGGGCTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT