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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTACAGAGCATCTGAAACCTTTAATATTGGCTATTGCGTCTCAAGACTCTGCATCATTTTTTTGGGACCGTAGTCTTGGTTCAGATTCTCCCATATCTgtaagttgctagtttgctaactgtatgtgattgtcctatttatattatttatttgccagggataattttgagtttcacag

Basic information

species Zea mays
transcript GRMZM2G324703_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G324703_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g50360.1 (Oryza sativa), 5'ss of exon 9
ATCTACAGAGCATCTGAAACCTTTAATATTGGCTATTGCGTCTCAAGACTCTGCATCATTTTTTTGGGACCGTAGTCTTGGTTCAGATTCTCCCATATCTgtaagttgctagtttgctaactgtatgtgattgtcctat-ttatattatttatttgccagggataattttgagttt---cacag
||||||| |||||| ||||||  ||||| |||  | ||| || ||||||||||||||||| ||| ||||||||||||||||| | ||||||||||| |||||||||| ||| |    |   ||  | ||||      || ||| |||||   | |    |  |||| | ||   ||   |||||
ATCTACAAAGCATCAGAAACCAATAATAATGGTCACTGCATCCCAAGACTCTGCATCATTCTTTCGGGACCGTAGTCTTGGTGCTGATTCTCCCATCTCTgtaagttcctactaatttg--tgggtatgataactgcatcttacattatagttctat--gaaataactatggagttatgcacag