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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcatgtggaacaaatataattttcctgtatttctactttcagaagagagtacaaacactcttcaaaaggtagttttccttcatttttgttgcatacctttttattttcaaagttctgtttgtctaatctcttgtaccacatttatatattgatgatgactatcaataaaatattttagAAAAAAATGAGAAGACTGGCAATGGATATAAATCAATTGTTGCAGAATTCGACCTTGTTATGCAG

Basic information

species Zea mays
transcript GRMZM2G324703_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G324703_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g50360.1 (Oryza sativa), 3'ss of exon 5
gtatcatgtggaacaaatataattttcctgtatttctactttcagaagagagtacaaacactcttcaaaaggtagttttccttcatttttgttgcatacctttttattttcaaagttctgtttgtctaatctcttgtaccacatttatatattgatgatgactatcaataaaatattttagAAAAAAATGAGAAGACTG-GCAATGGATATAAATCAATTGTTGCAGAATTCGACCTTGTTATGCAG
         | ||   ||    ||       ||     |   | |  ||||| ||||||  |  |||   | |    | | || | | |   |   |  |  |  |  || |   || |     ||   | |  |||   |||  |||   ||     ||  | |        | | | |||  | |      |||||  ||||                                           
---------gtaagttatgcggttgattaaaatggtaccaccctgttgagag-acaaacg-tgatcagctgatcacatgcattgaatatcactctgttaccctg-acatttacttttgtagGGATCAGGTATTATGTGGAACAAATATGACTTTCCTGTGTTTCT--------TCTCTCAGAGGAGAGCACACAGACTCTGCAAAAC----------------------------------------

upper sequence: GRMZM2G324703_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g50360.1 (Oryza sativa), 3'ss of exon 6
gtatcatgtggaacaaatataattttcctgtatttctactttcagaagagagtacaaacactcttcaaaaggtagttttccttcatttttgttgcatacctttttattttcaaagttctgtttgtctaatctcttgtaccacatt----tatatattgatgatgactatcaataaaatattttagAAAAAAATGAGAAGACTGGCAATGGATATAAATCAATTGTTGCAGAATTCGACCTTGTTATGCAG
                                                                          || |||   |   | |  |  ||   || |  || |||   ||   | | |  || |||  |   |||| |    |   | |  |    || ||||||||| |  ||   || || |||||||||| || ||||||||||  | ||| |||||||||||| ||||| |||||||||
--------------------------------------------------------------------------gtattctgcctgctcttatatatttattatagttctca---tttcttctttacaaactccagctacacaatgcaatgactctaaaaagagattatcaataacagCTTGCGGACAAGAATGAGAAGAGTGCCAATGGATATCTAGCAAATGTTGCAGAATTTGACCTCGTTATGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatctcttgtaccacatttatatattgatgatgactatcaataaaatattttagAAAAAAATGAGAAGACTGGCAATGGATATAAATCAATTGTTGCAGAATTCGACCTTGTTATGCAG
                       tattgat  putative branch site (score: 3)
                atttatatattgatga  TA-rich tract