1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatggcgtggtcttgctggtccctgtggcagcgcatggtattcgttgctagctgcgatgatgtgagtagtgactttttgtctactctttgcaaaacagTGAGGCAACGGGGCAGGAAGCGCACCATGGTCGGATGAATGGAGAAGAAGAAAAATATGTGGCATGGAATGGATGTATGTTATTAGAAAGACCGTCGTCT
species | Zea mays |
transcript | GRMZM2G313649_T06 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAAAATCCTGGCTGCGTACAGAAAGGCTTCGAAGCAATGGTGCTCCACCCAGAACAAGCTGGCTCAAGEST: gi|88748493|gb|DY532634.1|DY532634
genomic: CAGAAAGGCTTCGAAGCAATGGTGCTCCACCCAGAACAAGCTGGCTCAAGgtatggcgtg ... tgcaaaacagT
EST: GAAAATCCTGGCTGCGTACAGAAAGGCTTCGAAGCAATGGTGCTCCACCCAGAACAAGCTGGCTCAAGEST: gi|71442372|gb|DR823422.1|DR823422
genomic: CAGAAAGGCTTCGAAGCAATGGTGCTCCACCCAGAACAAGCTGGCTCAAGgtatggcgtg ... tgcaaaacagT
EST: GAAAATCCTGGCTGCGTACAGAAAGGCTTCGAAGCAATGGTGCTCCACCCAGAACAAGCTGGCTCAAGEST: gi|149084732|gb|EE174225.2|EE174225
genomic: CAGAAAGGCTTCGAAGCAATGGTGCTCCACCCAGAACAAGCTGGCTCAAGgtatggcgtg ... tgcaaaacagT
EST: GAAAATCCTGGCTGCGTACAGAAAGGCTTCGAAGCAATGGTGCTCCACCCAGAACAAGCTGGCTCAAGEST: gi|71762245|gb|DR960182.1|DR960182
genomic: CAGAAAGGCTTCGAAGCAATGGTGCTCCACCCAGAACAAGCTGGCTCAAGgtatggcgtg ... tgcaaaacagT
EST: GAAAATCCTGGCTGCGTACAGAAAGGCTTCGAAGCAATGGTGCTCCACCCAGAACAAGCTGGCTCAAGEST: gi|88748628|gb|DY532769.1|DY532769
genomic: CAGAAAGGCTTCGAAGCAATGGTGCTCCACCCAGAACAAGCTGGCTCAAGgtatggcgtg ... tgcaaaacagT
EST: GAAAATCCTGGCTGCGTACAGAAAGGCTTCGAAGCAATGGTGCTCCACCCAGAACAAGCTGGCTCAAGEST: gi|60343573|gb|DN210546.1|DN210546
genomic: CAGAAAGGCTTCGAAGCAATGGTGCTCCACCCAGAACAAGCTGGCTCAAGgtatggcgtg ... tgcaaaacagT
EST: GAAAATCCTGGCTGCGTACAGAAAGGCTTCGAAGCAATGGTGCTCCACCCAGAACAAGCTGGCTCAAG
genomic: CAGAAAGGCTTCGAAGCAATGGTGCTCCACCCAGAACAAGCTGGCTCAAGgtatggcgtg ... tgcaaaacagT
gttgctagctgcgatgatgtgagtagtgactttttgtctactctttgcaaaacagTGAGGCAACGGGGCAGGAAGCGCACCATGGTCGGATGAATGGAGAAGAAGAAAAATATGTGGCATGGAATGGATGTATGTTATTAGAAAGACCGTCGTCT
ctttttgtctactctt CT-rich tract
acttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggcgtggtcttgctggtccctgtggcagcgcatggtattcgttgctagctgcgatgatgtgagtagtgactttttgtctactctttgcaaaacagTGAGGCAACGGGGCAGGAAGCGCACCATGGTCGGATGAATGGAGAAGAAGAAAAATATGTGGCATGGAATGGATGTATGTTATTAGAAAGACCGTCGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA