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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagccacgaatcaaatatttagttgctgtctgtctttttgcttgttttataaatggtttgtttgcttctctgcagAGGGTATTTGCTTCGACATTTGTGGGACGAAAGTGTGTAATCAAAGAGCGTTTTTCAAAAAAGTACCGACACCCATTGTTGGACTCGAAGTTGACTCTAA

Basic information

species Zea mays
transcript GRMZM2G313649_T06
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G313649_T05 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os10g28640.1 (Oryza sativa), 3'ss of exon 2
gtgagccacgaatcaa-atatttagttgctgtctgtc-tttttgcttgttttataaatggtttgtttgcttctctgcagAGGGTATTTGCTTCGACATTTGTGGGACGAAAGTGTGTAATCAAAGAGCGTTTTTCAAAAAAGTACCGACACCCATTGTTGGACTCGAAGTTGACTCTAA
||||| || || |||| |||||||||||| || | |   |||| |||||||  |  || ||||||||  ||   ||||||||||||||| ||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| |
gtgagtcaggagtcaatatatttagttgcagtttcttacttttacttgttt-gttcatagtttgttttgtttgttgcagAGGGTATTTGTTTCAACATTTGTGGGACGGAAGTGTGTAATCAAAGAGCGGTTTTCAAAGAAGTACCGACACCCATTGTTGGACTCAAAGTTGACTCTTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211475124|gb|FL216727.1|FL216727
EST:     AAGAGCAAGAACAGGATTTTGGCGTACTGCTGAAGCAAGGTGCAGAAGGG                         AGGGTATTTGCTTCGACATTTGTGGGACGAAAGTGTGTAATCAAAGAGCGT
genomic: AAGAGCAAGAACAGGATTTTGGCGTACTGCTGAAGCAAGGTGCAGAAGGGgtgagccacg ... ttctctgcagAGGGTATTTGCTTCGACATTTGTGGGACGAAAGTGTGTAATCAAAGAGCGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttgctgtctgtctttttgcttgttttataaatggtttgtttgcttctctgcagAGGGTATTTGCTTCGACATTTGTGGGACGAAAGTGTGTAATCAAAGAGCGTTTTTCAAAAAAGTACCGACACCCATTGTTGGACTCGAAGTTGACTCTAA
                                    tttgtttgcttctct  CT-rich tract
                        ttttataaatggttt  TA-rich tract