1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtattcaccatatttatgagtcattataattatggttttcatattttttcatatctggaagaagttatttattatgatgaattcttgttgtgttgcagATATCCTGATGAATTTGAAAGTACCCATATCATTGGCAATAGGCAATTTCAAAAGGCTGTAGATCTTTTTAGTTCAGCTTCTGAAGAAATACAAGGCAAA
species | Zea mays |
transcript | GRMZM2G180732_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CACAGCACATGCAATGGGAAGAATGAATTATGCTATGGACGAGGGCCAGG ATATCCTGATGAATTTGAAAGTACCCGTATCATTGGCAATAGACAATTTCAEST: gi|31353425|gb|CD437782.1|CD437782
genomic: CACAGCACATGCAATGGGAAGAATGAATTATGCTATGGACGAGGGCCAGGgtattcacca ... tgtgttgcagATATCCTGATGAATTTGAAAGTACCCATATCATTGGCAATAGGCAATTTCA
EST: CACAGCACATGCAATGGGAAGAATGAATTATGCTATGGACGAGGGCCAGG ATATCCTGATGAATTTGAAAGTACTCGTATCATTGGCAATAGGCAATTTCAEST: gi|71426638|gb|DR807688.1|DR807688
genomic: CACAGCACATGCAATGGGAAGAATGAATTATGCTATGGACGAGGGCCAGGgtattcacca ... tgtgttgcagATATCCTGATGAATTTGAAAGTACCCATATCATTGGCAATAGGCAATTTCA
EST: CACAGCACATGCAATGGGAAGAATGAATTATGCTATGGACGAGGGCCAGG ATATCCTGAATGA-TTTGAAAGTACCTATATCATTGGCAATAGGCAATTEST: gi|31360352|gb|CD444709.1|CD444709
genomic: CACAGCACATGCAATGGGAAGAATGAATTATGCTATGGACGAGGGCCAGGgtattcacca ... tgtgttgcagATATCCTGA-TGAATTTGAAAGTACCCATATCATTGGCAATAGGCAATT
EST: CACAGCACATGCAATGGGAAGAATGAATTATGCTATGGACGAGGGCCAGG ATATCCTGATGAATTTGAAAGTACTCGTATCATTGGCAATAGGCAATTTCA
genomic: CACAGCACATGCAATGGGAAGAATGAATTATGCTATGGACGAGGGCCAGGgtattcacca ... tgtgttgcagATATCCTGATGAATTTGAAAGTACCCATATCATTGGCAATAGGCAATTTCA
ttttttcatatctggaagaagttatttattatgatgaattcttgttgtgttgcagATATCCTGATGAATTTGAAAGTACCCATATCATTGGCAATAGGCAATTTCAAAAGGCTGTAGATCTTTTTAGTTCAGCTTCTGAAGAAATACAAGGCAAA
ttcttgtt CT-rich tract
aagttatttattatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcaccatatttatgagtcattataattatggttttcatattttttcatatctggaagaagttatttattatgatgaattcttgttgtgttgcagATATCCTGATGAATTTGAAAGTACCCATATCATTGGCAATAGGCAATTTCAAAAGGCTGTAGATCTTTTTAGTTCAGCTTCTGAAGAAATACAAGGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA