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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgagtcgagccgagatgactacgaaccgagcgagccgacaagccacgagcatttcgtccagccctactcatattgacaagtaactctttctcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAGGTGGACATCCGCCCATTAGTCGAGATTGTGAAGATGAAACTCCAGGACG

Basic information

species Zea mays
transcript GRMZM2G180699_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G180699_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g22130.1 (Oryza sativa), 3'ss of exon 2
---cgagtcgagccgagatgactacgaaccgagcgagccgacaagccacgagcatttcgtccagccctactcatattgacaagtaactctttctcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAGGTGGACATCCGCCCATTAGTCGAGATTGTGAAGATGAAACTCCAGGACG
         || || |   | |  | ||      ||   || ||   |         |    ||   | || ||||  | |  ||  | ||  || |   |||||||| | |||||| ||||| ||| |||||||| ||||||| ||||| ||| |||||||||||||||| || ||| |||| ||||||||  |  |||  |
taggatagtgaaccaaataggcc-caaataatatgatttgataaataattctttgaccaaagagtggttctgatat--atagttatattttggtcctgaacagGAAGTGTATGACAAAGACACATTCATCGATGATGCAATGGGCAATGCGGAGCTGGACATCCGCCCATTGGTGGAGGTTGTCAAGATGAAGATTGAGGGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211518248|gb|FL155989.1|FL155989
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGAT
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGAT
EST: gi|16927312|gb|BM080381.1|BM080381
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|211133779|gb|FL155997.1|FL155997
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|213167755|gb|FM185663.1|FM185663
EST:     GAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: GAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|211133777|gb|FL155995.1|FL155995
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|211518239|gb|FL155980.1|FL155980
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|211515882|gb|FL155972.1|FL155972
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|211518241|gb|FL155982.1|FL155982
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|71768975|gb|DR966912.1|DR966912
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|211515884|gb|FL155974.1|FL155974
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|211522873|gb|FL340813.1|FL340813
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|211518246|gb|FL155987.1|FL155987
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|211133781|gb|FL155999.1|FL155999
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|91872317|gb|EB402274.1|EB402274
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACCATGGGTAATGCCGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|67013750|gb|CO442499.1|CO442499
EST:     ACGAAGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAACGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|67015303|gb|CO444052.1|CO444052
EST:     ACGAAGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAACGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|211518242|gb|FL155983.1|FL155983
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|71768976|gb|DR966913.1|DR966913
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|14245031|gb|BG873613.1|BG873613
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|211133775|gb|FL155993.1|FL155993
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|211133774|gb|FL155992.1|FL155992
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|211518249|gb|FL155990.1|FL155990
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|211133776|gb|FL155994.1|FL155994
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|211133783|gb|FL156001.1|FL156001
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|211518245|gb|FL155986.1|FL155986
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|50325930|gb|CO521056.1|CO521056
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|40335278|gb|CK369348.1|CK369348
EST:     ACGAAGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|37382572|gb|CF628240.1|CF628240
EST:     ACGAAGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|78120966|gb|DV539350.1|DV539350
EST:     ACGACAAACTCCCCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAGTGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|211133780|gb|FL155998.1|FL155998
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|211518243|gb|FL155984.1|FL155984
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|211133782|gb|FL156000.1|FL156000
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|211515885|gb|FL155975.1|FL155975
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|211518237|gb|FL155978.1|FL155978
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|211133778|gb|FL155996.1|FL155996
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|211518240|gb|FL155981.1|FL155981
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|211518236|gb|FL155977.1|FL155977
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|60354472|gb|DN221445.1|DN221445
EST:     ACGAAGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG
EST: gi|211518235|gb|FL155976.1|FL155976
EST:     ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG                         GAAGTTTTTGACAAGGACACTTTCGTCCATGATACAATGGGTAATGCAGAG
genomic: ACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 266

AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAGGTGGACATCCGCCCATTAGTCGAGATTGTGAAGATGAAACTCCAGGACG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 341

AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAGGTGGACATCCGCCCATTAGTCGAGATTGTGAAGATGAAACTCCAGGACG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 304

AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAGGTGGACATCCGCCCATTAGTCGAGATTGTGAAGATGAAACTCCAGGACG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 233

AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTGgtatgcgttc ... tcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAGGTGGACATCCGCCCATTAGTCGAGATTGTGAAGATGAAACTCCAGGACG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgagcatttcgtccagccctactcatattgacaagtaactctttctcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAGGTGGACATCCGCCCATTAGTCGAGATTGTGAAGATGAAACTCCAGGACG
                                aagtaac  putative branch site (score: 233)
                                      ctctttctcattttc  CT-rich tract
                      tcatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cgagtcgagccgagatgactacgaaccgagcgagccgacaagccacgagcatttcgtccagccctactcatattgacaagtaactctttctcattttcagGAAGTTTTTGACAAGGACACTTTCGTCGATGATACAATGGGTAATGCAGAGGTGGACATCCGCCCATTAGTCGAGATTGTGAAGATGAAACTCCAGGACG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - -gccacga