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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cggttatttggattttattttaaacagagtaccccccttcacttcaccacgcgtgggtgcgccggctaaccgtgatttttttttttgcaacattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG

Basic information

species Zea mays
transcript GRMZM2G180699_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G180699_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g22130.1 (Oryza sativa), 3'ss of exon 1
cggttatttggatt--ttattt-taaacagagtaccccccttcacttcaccacgcgtgg-gtgcgccggctaaccgtgatttttttttttgcaacattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG
    ||    | ||  || ||  |  |  | |||||        |||         |   || |||| ||||||  ||||  | |||  |  |||||| | ||||| ||||||||||| ||  |||| |||| |  ||||||||| ||| |||| |||||||||||||| || ||||| || || |||||| ||||||||
--tctaccctggttaattgttcatgtattgtgtaccttttgctgcttgtttttttttattgttcgcctgctaactatgatgatatttgct--aacatttcgcagAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGGAACGATGAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTGTTAGACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211518248|gb|FL155989.1|FL155989
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|16927312|gb|BM080381.1|BM080381
EST:     GATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|211133779|gb|FL155997.1|FL155997
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|211133777|gb|FL155995.1|FL155995
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|211518239|gb|FL155980.1|FL155980
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAACGAGTGTCAATCCGGAATGGGACGA
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAA-GAGTGTCAATCCGGAATGGGACGA
EST: gi|211515882|gb|FL155972.1|FL155972
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|211518241|gb|FL155982.1|FL155982
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|71768975|gb|DR966912.1|DR966912
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|211515884|gb|FL155974.1|FL155974
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|211518247|gb|FL155988.1|FL155988
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|211522873|gb|FL340813.1|FL340813
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|211518246|gb|FL155987.1|FL155987
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|211133781|gb|FL155999.1|FL155999
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|91872317|gb|EB402274.1|EB402274
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|67013750|gb|CO442499.1|CO442499
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAA
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|67015303|gb|CO444052.1|CO444052
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAA
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|211518242|gb|FL155983.1|FL155983
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|71768976|gb|DR966913.1|DR966913
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|14245031|gb|BG873613.1|BG873613
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|211133775|gb|FL155993.1|FL155993
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|211133774|gb|FL155992.1|FL155992
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|211518249|gb|FL155990.1|FL155990
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|211133776|gb|FL155994.1|FL155994
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|211133783|gb|FL156001.1|FL156001
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|211518245|gb|FL155986.1|FL155986
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|50325930|gb|CO521056.1|CO521056
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|40335278|gb|CK369348.1|CK369348
EST:     GCGACCTCCGATCCAGCGATCCCTATGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAA
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|37382572|gb|CF628240.1|CF628240
EST:     TCCGATCCAGCGATCCCTATGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAA
genomic: TCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|78120966|gb|DV539350.1|DV539350
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCTTTCGCATCGGCAAACA-                         AAATTTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAGTGGGACGA
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATT-GAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGA
EST: gi|211133780|gb|FL155998.1|FL155998
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|211518243|gb|FL155984.1|FL155984
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|211133782|gb|FL156000.1|FL156000
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|211515885|gb|FL155975.1|FL155975
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|211518237|gb|FL155978.1|FL155978
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|211133778|gb|FL155996.1|FL155996
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|211518240|gb|FL155981.1|FL155981
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|211518236|gb|FL155977.1|FL155977
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|60354472|gb|DN221445.1|DN221445
EST:     GCGACCTCCGATCCAGCGATCCCTATGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAA
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
EST: gi|211518235|gb|FL155976.1|FL155976
EST:     GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAG                         AAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC
genomic: GCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 202

CGTCGGACTGCTGAAGCTGCGCGTGGTGAGGGGGGTGAACCTCGCCGTCCGCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 523

CGTCGGACTGCTGAAGCTGCGCGTGGTGAGGGGGGTGAACCTCGCCGTCCGCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 632

CGTCGGACTGCTGAAGCTGCGCGTGGTGAGGGGGGTGAACCTCGCCGTCCGCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 249

CGTCGGACTGCTGAAGCTGCGCGTGGTGAGGGGGGTGAACCTCGCCGTCCGCGACCTCCGATCCAGCGATCCCTACGTCGTCGTTCGCATCGGCAAACAGgtccgctcct ... cattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accacgcgtgggtgcgccggctaaccgtgatttttttttttgcaacattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG
                  ggctaac  putative branch site (score: 249)
                             atttttttttttgcaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cggttatttggattttattttaaacagagtaccccccttcacttcaccacgcgtgggtgcgccggctaaccgtgatttttttttttgcaacattccacagAAATTGAAGACACGGGTGGTAAAGAAGAGTGTCAATCCGGAATGGGACGACGAACTCACCCTCTCTATCGAAGACCCTGCTGTTCCTATTAGACTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - -aaacaga
- - - - - - - - - - - - - - - - - cccttca
- - - - - - - - - - - - - - - - - - - - - - caccacg