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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGAAAGATGAGAATCTGTCTCCTCTTCTTCCCCTAGACGTCAATCTAACTGACCCATCACTCAGTGGTTTGGAAAGGACATTGTCACAACTCGATATGgtacgagtcctgtctgtatagtaaacgtgaacctgtaccatgatatatctcattcttattttctgcatttgttactactttag

Basic information

species Zea mays
transcript GRMZM2G179421_T02
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G179421_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os10g21940.1 (Oryza sativa), 5'ss of exon 10
ACTGAAAGATGAGAATCTGTCTCCTCTTCTTCCCCTAGACGTCAATCTAACTGACCCATCACTCAGTGGTTTGGAAAGGACATTGTCACAACTCGATATGgtacgagt-----cctgtctgtatagtaaacgtgaacctgtaccatgatatatctcattcttattttctgcatttgttactactttag
||||||| |||||||||| ||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||| ||| |||| ||||| || ||||||||| |  |     ||  | | | | |||    | ||| || ||    ||     | |   |  | ||    || ||  |||  | |||
ACTGAAAAATGAGAATCTTTCTCCTCTTCTTCCCCTGGACATCAATCTAATTGACCCATCACTCAGTGGTTTGGAGAGGGCATTATCACAGCTTGATATGgtatgcatgtctccccctttctgttgtaccattaaacatgaactggcatggcatttaccttattcttgctaatatggcact-ttctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26558065|gb|CA830300.1|CA830300
EST:     TGGAAAGGACATTGTCACAACTCGATATG                         GCAAATGAGCATTTGCAAAGTATTTTTCCATCATTTAAAGAGCTTCCTGGN
genomic: TGGAAAGGACATTGTCACAACTCGATATGgtacgagtcc ... actactttagGCAAATGAGCATTTGCAAAGTATTTTTCCATCATTTAAAGAGCTTCCTGGT
EST: gi|6194857|gb|AW146961.1|AW146961
EST:     CTGACCCATCACTCAGTGGTTTGGAAAGGACATTGTCACAACTCGATATG                         GCAAATGAGCATTTGCAAAGTATTTTTCCATCATTTAAAGAGCTTCCTGGT
genomic: CTGACCCATCACTCAGTGGTTTGGAAAGGACATTGTCACAACTCGATATGgtacgagtcc ... actactttagGCAAATGAGCATTTGCAAAGTATTTTTCCATCATTTAAAGAGCTTCCTGGT
EST: gi|211190018|gb|FL186108.1|FL186108
EST:     CTGACCCATCACTCARTGGTTTGGAAAGGACATTGTCACAACTCGATATG                         GCAAATGAGCAT
genomic: CTGACCCATCACTCAGTGGTTTGGAAAGGACATTGTCACAACTCGATATGgtacgagtcc ... actactttagGCAAATGAGCAT