1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cgttacatctttggttctttgttgttttttccatgatggataacagttgtagtagtgagttgttgactgtcagctgactttttttttgttattgtgacagAATTGCGATGAGGAAATGGAATCGCCAACAAAGAACAATTTGAATAGCAACAATAGCATCAAAGATATTTCTCAAGAGCACAAGAAATTAGCAAATGGAT
species | Zea mays |
transcript | GRMZM2G179421_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGAGGATGGTGTGAAGTTTGACAATAATGAAGAGAGCAAGAACTTGGAG AATTGCGATGAGGAAATGGAATCGCCAACAAAGAACAATTTGAATAGCAACEST: gi|14191044|gb|BG833274.1|BG833274
genomic: CAGAGGATGTTGTGAAGTTTGACAATAATGAAGAGAGCAAGAACTTGGAGgtaatcaatc ... attgtgacagAATTGCGATGAGGAAATGGAATCGCCAACAAAGAACAATTTGAATAGCAAC
EST: CAGATGATGTTGTGAAGTTTGACAATAATGAAGAGAGCAAGAACTTGGAG AATTGCGATGAGGAAATGGAATCGCCAACAAAGAACAATTTGAATAGCAACEST: gi|211190018|gb|FL186108.1|FL186108
genomic: CAGAGGATGTTGTGAAGTTTGACAATAATGAAGAGAGCAAGAACTTGGAGgtaatcaatc ... attgtgacagAATTGCGATGAGGAAATGGAATCGCCAACAAAGAACAATTTGAATAGCAAC
EST: CAGAGGATGTTGTGAAGTTTGACAATAATGAAGAGAGCAAGAACTTGGAG AATTGCGATGAGGAAATGGAATCGCCAACAAAGAACAATTTGAATAGCAAC
genomic: CAGAGGATGTTGTGAAGTTTGACAATAATGAAGAGAGCAAGAACTTGGAGgtaatcaatc ... attgtgacagAATTGCGATGAGGAAATGGAATCGCCAACAAAGAACAATTTGAATAGCAAC
gttgtagtagtgagttgttgactgtcagctgactttttttttgttattgtgacagAATTGCGATGAGGAAATGGAATCGCCAACAAAGAACAATTTGAATAGCAACAATAGCATCAAAGATATTTCTCAAGAGCACAAGAAATTAGCAAATGGAT
agctgac putative branch site (score: 3)
ctttttttttgttatt CT-rich tract
actttttttttgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgttacatctttggttctttgttgttttttccatgatggataacagttgtagtagtgagttgttgactgtcagctgactttttttttgttattgtgacagAATTGCGATGAGGAAATGGAATCGCCAACAAAGAACAATTTGAATAGCAACAATAGCATCAAAGATATTTCTCAAGAGCACAAGAAATTAGCAAATGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA