1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttggcacagtcgccatcttcataactttctttatcaagaatatggaggcccagcaaagctgaattctctacctgtctaccatgtgtgtgcagGTCAACTTGGTTGAGTGGCTCAAGACCATGGTTGCCGAGAGGAAAGCGGAGGAAGTTCTGGACCCAAAGATGGCTGAAAAGCCTTCTCCCAAAACGCTGA
species | Zea mays |
transcript | GRMZM2G176604_T04 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGATCATCACTGGTAGATCTCCTGTAGACTACACAAGAGCAGCTGGAGAG GTCAACTTGGTTGAGTGGCTCAAGACCATGGTTGCCGAGAGGAAAGCGGAGEST: gi|60352421|gb|DN219394.1|DN219394
genomic: AGATCATCACTGGTAGATCTCCTGTAGACTACACAAGAGCAGCTGGAGAGgttggcacag ... gtgtgtgcagGTCAACTTGGTTGAGTGGCTCAAGACCATGGTTGCCGAGAGGAAAGCGGAG
EST: AGATCATCACTGGTAGATCTCCTGTAGACTACACAAGAGCAGCTGGAGAG GTCAACTTGGTTGAGTGGCTCAAGACCATGGTTGCCGAGAGGAAAGCGGAGEST: gi|60394580|gb|DN227450.1|DN227450
genomic: AGATCATCACTGGTAGATCTCCTGTAGACTACACAAGAGCAGCTGGAGAGgttggcacag ... gtgtgtgcagGTCAACTTGGTTGAGTGGCTCAAGACCATGGTTGCCGAGAGGAAAGCGGAG
EST: AGATCATCACTGGTAGATCTCCTGTAGACTACACAAGAGCAGCTGGAGAG GTCAACTTGGTTGAGTGGCTCAAGACCATGGTTGCCGAGAGGAAAGCGGAG
genomic: AGATCATCACTGGTAGATCTCCTGTAGACTACACAAGAGCAGCTGGAGAGgttggcacag ... gtgtgtgcagGTCAACTTGGTTGAGTGGCTCAAGACCATGGTTGCCGAGAGGAAAGCGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggcacagtcgccatcttcataactttctttatcaagaatatggaggcccagcaaagctgaattctctacctgtctaccatgtgtgtgcagGTCAACTTGGTTGAGTGGCTCAAGACCATGGTTGCCGAGAGGAAAGCGGAGGAAGTTCTGGACCCAAAGATGGCTGAAAAGCCTTCTCCCAAAACGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG