1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCGAGGAGAATGTCATCGGGGAGGGTGGCTACGGGATCGTGTACAAGGGCACGCTGCACGACTCCACTTTGATCGCCGTCAAGAATCTCCTCAATAATAGgtactacactacttaattggcgtcctcctttcgtggaaggttccttgcctgttttgctcacttcggctatgacttccaatgggggccggggcaccaatcc...
species | Zea mays |
transcript | GRMZM2G176604_T04 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCTGCACGACTCCACTTTGATCGCCGTCAAGAATCTCCTCAATAATAAG GGGCC-GGCCGEST: gi|148973240|gb|EE024318.2|EE024318
genomic: CGCTGCACGACTCCACTTTGATCGCCGTCAAGAATCTCCTCAATAATA-Ggtactacact ... caaacaccagGGGCCAGGCCG
EST: ACGCTGCACGACTCCACTTTGATCGCCGTCAAGAATCTCCTCAATAATAG GGGCCAGGCCGAGAAGGAGTTCAAGGTGGAGGTCGAAACAATTGGTCGTGTEST: gi|76915910|gb|DV166163.1|DV166163
genomic: ACGCTGCACGACTCCACTTTGATCGCCGTCAAGAATCTCCTCAATAATAGgtactacact ... caaacaccagGGGCCAGGCCGAGAAGGAGTTCAAGGTGGAGGTCGAAGCAATTGGTCGTGT
EST: CGCTGCACGACTCCACTTTGATCGCCGTCAAGAATCTCCCTCA-TAATAG GGGCCAGGCCGAGAAGGAGTTCAAGGTGGAGGTCGAAGCTATTGGTCGTGTEST: gi|71322783|gb|DR798077.1|DR798077
genomic: CGCTGCACGACTCCACTTTGATCGCCGTCAAGAATCTCC-TCAATAATAGgtactacact ... caaacaccagGGGCCAGGCCGAGAAGGAGTTCAAGGTGGAGGTCGAAGCAATTGGTCGTGT
EST: ACGCTGCACGACTCCACTTTGATCGCCGTCTAGAATCTCCTCAATAATAG GGGCCAGGTCGAGAAGG
genomic: ACGCTGCACGACTCCACTTTGATCGCCGTCAAGAATCTCCTCAATAATAGgtactacact ... caaacaccagGGGCCAGGCCGAGAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGAGGAGAATGTCATCGGGGAGGGTGGCTACGGGATCGTGTACAAGGGCACGCTGCACGACTCCACTTTGATCGCCGTCAAGAATCTCCTCAATAATAGgtactacactacttaattggcgtcctcctttcgtggaaggttccttgcctgttttgctcacttcggctatgacttccaatgggggccggggcaccaatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC